3I31


Conserved Protein Domain Family
GUCT_Hera

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cd12938: GUCT_Hera 
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RNA-binding GUCT-like domain found in Thermus thermophilus heat resistant RNA-dependent ATPase (Hera) and similar proteins
This subfamily corresponds to the Gu C-terminal (GUCT)-like domain of Hera and similar proteins. Thermus thermophilus Hera is a DEAD box helicase that binds fragments of 23S rRNA and RNase P RNA via its C-terminal domain. It contains a helicase core that harbors two RecA-like domains termed RecA_N and RecA_C, a dimerization domain (DD), and a C-terminal RNA-binding domain (RBD) that reveals a compact, RRM-like fold and shows sequence similarity with GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and plant DEAD-box ATP-dependent RNA helicase 7 (RH7 or PRH75).
Statistics
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PSSM-Id: 240595
Aligned: 16 rows
Threshold Bit Score: 66.5528
Created: 15-Dec-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3I31_A         3 ERSLLTGEeGWRTYKATGPrl--------sLPRLVALLKGQGl----------EVGKVAEAE----GGFYVDLRPEARPE 60   Thermus thermo...
XP_002976111 439 KRSLLTYEeGYMTLQLTGGnlid----ssaVSSAVMQLSSKAg---------mSMGRVTMLSsstaTGGVFDLPEDLAKE 505  Selaginella mo...
YP_004056955 433 PRSLLTGDeGWRTLELEAPql--------sAGKVVAVLKRAGf---------sDIGRIQLAG----GVAYADVRAGELDR 491  Oceanithermus ...
NP_295347    310 AASLLSGEeGLTTLILHGErl--------sVPRTVALIARAVdvd------trRLGKVRQWR----GGTVADVPSEFVEK 371  Deinococcus ra...
CBN74178     703 RRSMLTGEpDKVTVQMVAPrqlt----sgdVMFAVGKLGRAAgf-------epMVGRIAIAKd--pTTAVFDMSTEAADQ 769  Ectocarpus sil...
XP_003079318 465 PRSLLTGApNSCTYMVVDSadsepairagdLLRALTEIDRKLa---------dGCGKIRFLAn--kNGLCFDIDAAYMSD 533  Ostreococcus t...
XP_003056927 585 PRSLLTSDvGLTTMVAKGHmll-----prdLLRALSMVNRAAa---------dGVGRIRILAd--nSGLCFDMNHTIVND 648  Micromonas pus...
YP_003705769 424 PRSLLTGEeGWTTLKLTGRpl--------sVPQTVRMLKQAGa---------gDIGRVQSAR----DGAYADLRPEEAER 482  Truepera radio...
EJK48957     708 SRSLLTGEaGFSTVEMTNSrgrpv--spgdVMFTVSKLSRMSqkeggdlsfdgDVGKIQTNRe--tGNAVFDMGVEDAKK 783  Thalassiosira ...
YP_004171796 429 NASLLSGEeGMTTIILNAErm--------sVARAVALIARSTdid------trRLGKIRLWR----GGAVADLPNEAVAP 490  Deinococcus ma...
3I31_A        61 VAGLRLEPA 69   Thermus thermophilus HB27
XP_002976111 506 ILALQNVGS 514  Selaginella moellendorffii
YP_004056955 492 LDAVQGLRA 500  Oceanithermus profundus DSM 14977
NP_295347    372 LMAAAPLDG 380  Deinococcus radiodurans R1
CBN74178     770 LVKFSKEQN 778  Ectocarpus siliculosus
XP_003079318 534 LETVTDLNG 542  Ostreococcus tauri
XP_003056927 649 VIASAEELE 657  Micromonas pusilla CCMP1545
YP_003705769 483 LGGEVEGLQ 491  Truepera radiovictrix DSM 17093
EJK48957     784 LVEFSAEIE 792  Thalassiosira oceanica
YP_004171796 491 LLAKNPIDD 499  Deinococcus maricopensis DSM 21211
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