2ODG,1H9F


Conserved Protein Domain Family
LEM

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cd12934: LEM 
Click on image for an interactive view with Cn3D
LEM (Lap2/Emerin/Man1) domain found in emerin, lamina-associated polypeptide 2 (LAP2), inner nuclear membrane protein Man1 and similar proteins
The family corresponds to a group of inner nuclear membrane proteins containing LEM domain. Emerin occurs in four phosphorylated forms and plays a role in cell cycle-dependent events. It is absent from the inner nuclear membrane in most patients with X-linked muscular dystrophy. Emerin interacts with A-type and B-type lamins. Man1, also termed LEM domain-containing protein 3 (LEMD3) is an integral protein of the inner nuclear membrane that binds to nuclear lamins and emerin, thus playing a role in nuclear organization. LAP2, also termed thymopoietin (TP), or thymopoietin-related peptide (TPRP), is composed of isoform alpha and isoforms beta/gamma and may be involved in chromatin organization and post-mitotic reassembly. Some LAP2 isoforms are inner nuclear membrane proteins that can bind to nuclear lamins and chromatin, while others are non-membrane nuclear polypeptides. This family also contains LEM domain-containing protein LEMP-1 and LEM2. LEMP-1, also termed cancer/testis antigen 50 (CT50), is encoded by LEMD1, a novel testis-specific gene expressed in colorectal cancers. LEMP-1 may function as a cancer-testis antigen for immunotherapy of colorectal carcinoma (CRC). LEM2, also termed LEMD2, is a novel Man1-related ubiquitously expressed inner nuclear membrane protein required for normal nuclear envelope morphology. Association with lamin A is required for its proper nuclear envelope localization while its binding to lamin C plays an important role in the organization of lamin A/C complexes. Some uncharacterized LEM domain-containing proteins are also included in this family. Unlike other family members, these harbor an ankyrin repeat region that may mediate protein-protein interactions.
Statistics
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PSSM-Id: 240585
Aligned: 69 rows
Threshold Bit Score: 39.3098
Created: 21-Dec-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
polypeptide
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:polypeptide substrate binding site [polypeptide binding site]
Evidence:
  • Structure:2ODG; Homo sapiens emerin binds barrier-to-autointegration factor (BAF) through its LEM-domain, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                       ###### # #  ## ##      
2ODG_C         7 LSDTELTTLLRRYNiPHGPVVGS-TRRLYEKKIFEYET 43  human
Q8NAG6       361 VSDLELLKGLRALGeNPHPITPF-TRQLYHQQLEEAQI 397 human
XP_003240618 336 IDDADLKSRLARFG-INQPITNT-TRNVLHKKLLKLEM 371 pea aphid
ADY41576     205 LPDPALRREFESRGvVIGPLTPS-TRCVYEMKLARVLA 241 pig roundworm
ACI90355       6 LNDQQLRAELLRFGeTVPPITNR-NRPDLLARLEILRA 42  Philodina roseola
ABA40301       4 INDDELRSALSRYLdVVPPVTES-TRATLIAKLKKCIS 40  Schistosoma japonicum
XP_003729604 109 LTDKELREELSYYN-ISAAITDT-TRGAYEKKLAGLMT 144 purple urchin
EFO24234     287 LSDERLKQELAKRGeCIGPLLEN-TRPAYELKLARLIA 323 Loa loa
XP_001942668   5 ISDQELRRRLSVFNaVVPPVTST-TRNLLLKKLASLEG 41  pea aphid
CAX69947       7 LSDDELREELSSKGyHPPPIQDDvTRRILRKKLAILID 44  Schistosoma japonicum

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