Conserved Protein Domain Family
VKOR_4

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cd12921: VKOR_4 
Vitamin K epoxide reductase (VKOR) family in bacteria
This family includes vitamin K epoxide reductase (VKOR) present only in bacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. This family also has a cysteine peptidase domain present at the N-terminus of the VKOR domain.
Statistics
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PSSM-Id: 240604
Aligned: 49 rows
Threshold Bit Score: 51.1695
Created: 10-Sep-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activeredox center
Feature 1:putative active site [active site]
Evidence:
  • Comment:four cysteines and one serine or threonine are inferred to be the active center

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                        #       #     #                                 
EFR56046     163 WMYLIINFMGMGVSYLLLQKQLHaqslygdkiCtlfhqkDCNTVLESDAAnfmglFSWSEIGFGYFMSNIIgilffp--- 239 Bacteroides fra...
CAG35450       1 MLNLIIVLIGILVTGTQTALIFFgeq----aiCfn---eGCAVVESFTKVp---pVIFNLAGCLYFLLIFYtfcrarsg- 69  Desulfotalea ps...
CCB91582      12 KLWLAAQLAVIAGLVLTIISILKl--------Cs----aQCAEGHNWRLFg----LPFEALGGTFFTLAAIgqwlsrk-- 73  Waddlia chondro...
CAF23536      12 FSQRNFWIVSLSLISGLILSILSwl-----elCv----eHCSANQEYRLFg----MPFALAGMAFFPVMLAihffskk-- 76  Candidatus Prot...
EFB41468      12 SLSFLIVSLALASGMILTIVSWLk-------lCs----vECSEGHKYRLFg----FPFEVLGGIFFVGTGIvhflswr-- 74  Parachlamydia s...
AEH22401      13 ILFFLFSITGVILIISEIYLNLQqk-----tlCqs---eGCFLVHIFDTY-----NLLNYIGALLFFCLVIisfldilei 79  Thermodesulfoba...
ABL00581      90 FPGLITWVASLAGMGLSLEAVFKi--------Cg-----SCSVTADYRLFg----MEFGWVGIGFFALLLPllalrgr-- 150 Pelobacter prop...
ADW18863      11 LGQFLALVASLLIVGQIGYTLYQgs-----plCln---gGCKVVEKLTRV-----SPLVFNGVGLFFFQLVywglrsarg 77  Desulfobulbus p...
YP_004339979   6 NLFKGIVAAGLLTTIIEISLRIFtns----siChs---qGCALVAKHVRYg---eISILIIGCIFFFVLLVsssieek-- 73  Hippea maritima...
YP_002249084   9 ISSLFYLSGFLFILAETILHIYGks------vCst---eGCKVVESFVKGg---nLVLLIAGLILFGTLFFisfhkfses 76  Thermodesulfovi...
Feature 1                                          #  #              
EFR56046     240 ---elifyMVWVNILALPYTIWSVWYQskiARQWCVLCLIVQCLLWCLFFVD 288 Bacteroides fragilis 3_1_12
CAG35450      70 -sdgwrqlASLLLLAGMAAEGVLVAFQyyiVDIFCSYCLIICSLVFALNLIA 120 Desulfotalea psychrophila LSv54
CCB91582      74 -nltishlQFLFLGTAVGAEIYFIYVQkvhIGSFCPVCLGIAFCLAIAFMIQ 124 Waddlia chondrophila 2032/99
CAF23536      77 -fpslsklTSWSLAAAFGAEIMFILIQkyeIRHWCPVCLGIALTVTIACIAR 127 Candidatus Protochlamydia amoebophila UWE25
EFB41468      75 -nskltflTALLLVGGLGAELYFILMQkyqIGVWCPVCLGIAASIGIAALAL 125 Parachlamydia sp. Hall's coccus
AEH22401      80 kltqllnlRTYILALAVIVEGYFIGFQkwiLNEYCSYCLTVASLIFLCFLLD 131 Thermodesulfobacterium sp. OPB45
ABL00581     151 -saccawlALLLLFAAAGAEARFIWIQkyeIGQWCPICLSLAATIFLACAGV 201 Pelobacter propionicus DSM 2379
ADW18863      78 emrrlpqfIRTVLLAGLGVEAVLVSFQylvAQAFCAYCVGILAFVVLLNLLL 129 Desulfobulbus propionicus DSM 2032
YP_004339979  74 -npkisniIDLMLNAALAAEGFLVGYQlfrIHKICYFCFGIFITIVILSLLR 124 Hippea maritima DSM 10411
YP_002249084  77 lisfvekvHSGILIIALSIEGYLLGFQtfiIKEFCVFCFTVFGILFLSSLFR 128 Thermodesulfovibrio yellowstonii DSM 11347

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