2K1K


Conserved Protein Domain Family
TM_EphA1

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cd12841: TM_EphA1 
Click on image for an interactive view with Cn3D
Transmembrane domain of Ephrin Receptor A1 Protein Tyrosine Kinase
Ephrin receptors (EphRs) comprise the largest subfamily of receptor PTKs, and are classified into two classes (EphA and EphB), corresponding to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EphB receptors, which display promiscuous ligand interactions within each class. EphA1 has been associated with late-onset Alzheimer's disease and certain cancers such as colorectal and gastric carcinomas. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a single-span transmembrane (TM) domain, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The TM domain mediates dimerization.
Links
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Statistics
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PSSM-Id: 214014
Aligned: 18 rows
Threshold Bit Score: 35.4162
Created: 18-Oct-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interface
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Structure:2K1K: Human EphA1 TM domain forms homodimers; contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                # ##  ## ###  ##  ##  #    #  
2K1K_A         1 SPPVSRGLTGGEIVAVIFGLLLGAALLLGILVFRSRRA 38   human
EFB18087     486 SPPVSRRLTGGEIVAIIFGLLLAVALLLGMLFFRSRKA 523  giant panda
XP_001362907 539 SPPLFKGLSGGEIVAVVFGLMLALALILGFFIFRKRRR 576  gray short-tailed opossum
AER97996     425 SPPVSRGLTGGEIVAIIFGLLLAIALLLGILFFRSRKT 462  domestic ferret
XP_003771743 538 SPPVSKGLSGGEIVAVVFGLLLALALILGFLIFRTRRK 575  Tasmanian devil
AAG12206     537 SPPVSRSLTGGEIVAVIFGLLLGIALLIGIYVFRSRRG 574  house mouse
NP_001137567 539 SPPVSRVLTGGEIVAIIFGLLLGVALLLGMLLFRSRRA 576  cattle
XP_003422853 537 SPPASRGLTGGEIMAIVFGLLLCTALLLGTLIFRSRRG 574  African savanna elephant
XP_003475292 539 PPPASRSLTGGEIVAIIFGLLLGVALLVGIYICRSRRG 576  domestic guinea pig
EHB15784     507 PPPASRSLTGGEIVAIIFGLLVGLALLLGIYFCRSRRG 544  naked mole-rat

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