Conserved Protein Domain Family
TmCorA-like_u3

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cd12832: TmCorA-like_u3 
Uncharacterized subfamily of the Thermotoga maritima CorA-like family
This subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of the TmCorA-like family are found in all three kingdoms of life. It is a functionally diverse family which includes the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, and three Saccharomyces cerevisiae proteins: two located in the plasma membrane: the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.
Statistics
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PSSM-Id: 213366
Aligned: 20 rows
Threshold Bit Score: 342.274
Created: 16-Jul-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:oligomer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                   #  ##        # #                                  
ADZ78637   15 WIDLTd-PSMEEILDISKRFa------LHETSIKDCMqPDHLPKHEIVd-gYTFIIVRvytqdpmndadtiqeLTNKIAI 86  Sphingobacterium s...
EFK33480   14 WVDVEa-PTVEDLKFLHERYe------INNLLLEDTMdPNHLPKYEEDg-nVKFFLLRestelerknlntisdISTKIGI 85  Chryseobacterium g...
EHM99408   14 WIDVEa-PTEEDLDFLQNRYe------INKLLLQDTVdPNHLPKYEEAd-nVKFFLTRentelerinlnsisdVSTKLGI 85  Elizabethkingia an...
EHQ04679   15 WKDVVg-PAHADLTALAKQYg------LHRRAVEDCLdPAHLPKFERLg-dKTFIILRawdrhaaegadtvtaLTRKVAV 86  Leptonema illini D...
AFM06050   14 WIDIIs-PSDKDLRELIRQYk------MPSAAVKDCMsAFHTPKVEPIg-eWTYFIVRyydlycedeadtiqeITKKAAI 85  Flexibacter litora...
AEE49349   12 WLDVTq-PHKIQLLDIASKFn------LHAYTVQDCLePDHLPKFEIDg-lARFIIVRiynpkdletphsvqdLTSKIAL 83  Haliscomenobacter ...
ADQ81204   14 WIDVTa-PTKEDLDSLHHQFh------INKLHLDDTVdPSHLPKFEEVe-gVKFFLTRenvelqrknlngindVSTKLGI 85  Riemerella anatipe...
ADX67807   30 WIDLEn-PTKEELEELGRVYq------FNRFTLADNLePGHLPKFESDv-lISFLLVRfygkdkhqhqnivreFSHKIGV 101 Weeksella virosa D...
CAE78962   13 WVDCEa-PSQEDLRQLAEEFp------IPLQALSTCLdPEHLPMCTFYekvCLFILRHhdahakp-tagtmqeLTTKIIF 84  Bdellovibrio bacte...
EFZ24635  129 WVDISahPTASLDEYRGALSqvlidlgTHETLVSDALePMLLPQTTVMd-gCHCLVVRyaedvsktrmdgfqeLTNRLTI 207 Trypanosoma cruzi
Feature 1                         #   #              #  #       #  #   #     ##  #            
ADZ78637   87 FYtsdYVITVHRTEq-PLIADVKAKaida---ggckDTICIVNRIVRASLLTFEEPSVKLAQSLDYFEENVFLkqr-kap 161 Sphingobacterium s...
EFK33480   86 FLvenTIITIHRMKt-RSITETKKKvsli---qqdvTPQQITLMIAILIMKSFDDESLSLFETMDNIENEIFLkntnhts 161 Chryseobacterium g...
EHM99408   86 FIigqTIITVHRLStsSVIKTKNELdnskt--pdliTVERIALRLAHKVIKTFDAESENLLELLDKIESEIFLkktshtn 163 Elizabethkingia an...
EHQ04679   87 FVsdeFLLSIHRKDl-RVIAALREHwqpd----ardPRTGLLADIINAALSTYREPLESLIDELDRYEENIFKsrs-ekd 160 Leptonema illini D...
AFM06050   86 FVnkdYILTIHKTGq-PSLAQLANEwrngs-htryeSTTHFTYKLLDMLLKTYEVGMNQASERLDVYEKEVFRemk-dss 162 Flexibacter litora...
AEE49349   84 FYtdnYLITIHRLPq-PYFEEIEKKylap---ghtmTPCDVATHIIWHAVNSYLEPAQYLDDEVDKIESAIFArhs-rgk 158 Haliscomenobacter ...
ADQ81204   86 FIiekIIITIHRTDn-KSILEIKEDlnknpdkykkySPDKLALILGLKIMKSFDDESKKLIEIIDKLETEIFMqnspqln 164 Riemerella anatipe...
ADX67807  102 YFnenIVLTIHQKPt-NLLVQAKEAclmknrdhqkiNSKLLLYYILRQTLLSYQLPGEKMMEKIDAFETIVFSdks-nki 179 Weeksella virosa D...
CAE78962   85 FVgqdFLVTIHRAPl-ECISNKKDKvaf-----eqiPLYTLVKSLCVQTIKSFDAPLDVLDSKTDVIEERVFAlkr--rt 156 Bdellovibrio bacte...
EFZ24635  208 LVkdtRVMTIHRTHc-EFVENIKWNwlnlmkehgmqGKTFLLNLLVKESVDTFNTALTCCIVEFDNYEGSLFSskrqrst 286 Trypanosoma cruzi
Feature 1      ##  #  ##  #   #                      ## ##  ## ##  ## ## ###         ######## 
ADZ78637  162 VLRGLYYVKRKVDVIKRLLILSYEIIDKIDTPk---qRNIYTRDLRDQYVRMQNIYDNLSENTA-------QLLSAYFSI 231 Sphingobacterium s...
EFK33480  162 QIRRLYKLKRKSGLNSRVLVISTDAIDKFKLLn---lQDSEFVDLKDKHKDVVADFDHLNIQIT-------NLISMFLAL 231 Chryseobacterium g...
EHM99408  164 QIKRLYKLKRKTGLNLRILNISSDWVQNFNKLp---lEHVEVMDLVDKQKDAIADFEHLNQQVT-------NLIGMFLAI 233 Elizabethkingia an...
EHQ04679  161 LMPALYAIKRRAYILKRMIWLHREILEKLHINs---kDDPHLEDTMDNAAGLLFQAEDLHESVT-------GLISLHLSI 230 Leptonema illini D...
AFM06050  163 IFERLYQLKRRGSVFKRMLYLTKELIQTYMRYs---kDYPLAHHNIEFVDSLYYRVDELHENAN-------NLINLRLSL 232 Flexibacter litora...
AEE49349  159 FEEKLYHLRRMISVNKKLLILTESVIDEVYRDt---kSNPFIQDLKDLNLKLHSNYEHIHEDVS-------NLLNIYISI 228 Haliscomenobacter ...
ADQ81204  165 PIKKLYKIKRKAGLNARVLNMSSDWIGAFKKLn---lKDIEIADLVDKQKDVMSDFDHISAQIT-------NLISVYIAL 234 Riemerella anatipe...
ADX67807  180 TLKKIFQLKREASSCKKILSLMDDVIKELTIFq---kNPSQFQDLRESSQKYLHFYSQILDDIQ-------NLIAIFMSL 249 Weeksella virosa D...
CAE78962  157 ILREGYQIKRKAASYRKIFKFTADVFNKIHQHen--iPLKDIQQVREPLEKVAFYADDIYEEITgllnlhlSLMSQKTNE 234 Bdellovibrio bacte...
EFZ24635  287 LAREMYHIKRRASVYARVLVLTGEAYSQLCGAlsimpNDVQFQDVQQDIAHVRSLSEELHNNAE-------SGLQLLFQL 359 Trypanosoma cruzi
Feature 1     ############# ### ###### ########          ##  ##  #          #  #   
ADZ78637  232 ASHRTNEIMRILTIFSVFFMPLTFIVGIYGMNFHYMPELNWHLGYPIVMLVMaiiTLAIYFWFRKKGWL 300 Sphingobacterium sp. 21
EFK33480  232 SDQKANQVMKVLAIYSVYFLPITFIAGVYGMNFDNMPELHHKYGYFITLGAMa-tVVITTFIYVRRKQW 299 Chryseobacterium gleum ATCC 3...
EHM99408  234 SDQKNNEAMKILSMYSIYFLPITFIAGVYGMNFDVMPELHHKSGYFVTLGVMa-lVVIITFIYMRRKRM 301 Elizabethkingia anophelis Ag1
EHQ04679  231 ASHRTNEVMRLLTIFSVFFLPLTFIVGVYGMNFDYMPELRLQWGYPATLLAMgsvSLSMFLWLRYKGWL 299 Leptonema illini DSM 21528
AFM06050  233 ASHRTNEIMGILTIFSVFFLPLTFIVGVYGMNFKSMPELKSPHGYLIVWVVMitmVASIYIWFKKKGWV 301 Flexibacter litoralis DSM 6794
AEE49349  229 SAHKTNEVMKVLTIFSVFFMPLTFIVGIYGMNFKYMPELQLKWGYPASLLLMlviIVVIYTWFKRKKWL 297 Haliscomenobacter hydrossis D...
ADQ81204  235 SDQKANQVMKLLAMYSVYFLPITFIAGLYGMNFEFMPELHQKYGYYATLGVMl-iIVIATFIYFKKKKY 302 Riemerella anatipestifer RA-GD
ADX67807  250 SNQKTNDIMKLLTIFSAFFLPLTFMVGVYGMNFEYMPELAYRYGYPICLVAMiaiVIFIYFWFKKKQIL 318 Weeksella virosa DSM 16922
CAE78962  235 ASFRTNEVMRVLTVLSMFFLPLNFIAGVYGMNFENMPELKEPNGYYATLAFMvmvVIGITWWIYKKGWL 303 Bdellovibrio bacteriovorus HD100
EFZ24635  360 SSFQLNELMRVLTIFSAFFIPLSFVASIYGMNFEHLPLLEDEYGHMYCIAMMvavGGGLGVWFKLRHFI 428 Trypanosoma cruzi

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