Conserved Protein Domain Family
ZntB-like

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cd12824: ZntB-like 
Salmonella typhimurium Zn2+ transporter ZntB-like subfamily
A bacterial subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.
Statistics
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PSSM-Id: 213358
Aligned: 4 rows
Threshold Bit Score: 406.52
Created: 19-Jun-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Comment:based on Thermotoga maritima CorA and on partial structures: the intracellular domains of Vibrio parahaemolyticus and Salmonella typhimurium ZntB; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                              #  ##         # #                                      
EDM60670   27 PNHWYHCERLhpdIRSWLEDn-HVPRATVDHLLAdeSRPSFHPLdddNFMLILRGINMNENASPEDMLSIRILYfqGALI 105 Vibrio parahaemoly...
ACB35872   72 SFLWLHFNLAdkaAERWLAEhtDLAEAFFDTLRGglHSTRVERVe-qTLLAVVNDLQFDFAFEPSDTATLWICLnrRLVV 150 Leptothrix cholodn...
EGV18692   36 GMTWTDIDISderERDWLRSwaQLGEDTKSLLLGpvRFSHSEPVh-eGVLLSLKAVRGDKADGFDQPTDFRLLIgkTDAV 114 Thiocapsa marina 5811
EIC20769   23 GATWFDVDMAddaDRQWLMGlqEINDQTRQALLApvRFNHYEQVp-dGTLVSIRTPRSEQIEDISELADLKLLIgpARAM 101 Thiorhodovibrio sp...
Feature 1                #   #           #  #   #   #  ##  #  ## ##  #           ## ##  ##  ##
EDM60670  106 STRKIPsRAIMEIRQALAehkGPKSLASLLNQIIEGLNGKIDLYLDTIEETLNEFDVNDe------STYNHIAAQKALIS 179 Vibrio parahaemoly...
ACB35872  151 TGRRKPlRSVDQLRVSVRdgePVRSSADLLAQLLRHQVDVLGDLARQMTNRVDEVEDRLlsgrlehKRARLGAMRRLLVR 230 Leptothrix cholodn...
EGV18692  115 TVRSGSaAPVDELRRYLRsnsSLKTPVDLLAFMISGMTKRLETVIFDLTMATDALEDQLldvgtapPPEALIGLQQRVFR 194 Thiocapsa marina 5811
EIC20769  102 TVRSGPiAAVEVLRRHRSd-sSLVTAVDLLGFMVSAMTKRMEAVIFDLTQDIDAVEDALldggtapPPQALSELRRRIFR 180 Thiorhodovibrio sp...
Feature 1      ##   # ##  ##  ##          ## ##  ## ##  ## ## ###  ######## ############# ### 
EDM60670  180 IKRFIRPQQYAIRDLIESesel-vtsRPHQYRFAHNNITRINETIEFYLGEVALFQDEIKHNRDEKTNKNSYLFTLVATI 258 Vibrio parahaemoly...
ACB35872  231 LQRLLLPEPAALFRLLQHpppwmtetDVQDLRDATEEFSVVLRDMVALQERVKLLQEEVAAQVNEQTGRSLFVLTVVTVL 310 Leptothrix cholodn...
EGV18692  195 ARRQIKTVQQVLSPIATDpavalasrDRETLARSSNHVNRYIEALDDCRTRLRMLEDQIEAQRAESMTRSSLELTVVATV 274 Thiocapsa marina 5811
EIC20769  181 TRRQVNATQQVLAPMTTDpalvldadDRETLVRSSNYVTRYLQGLDECRTRVQLLEDQIDAQRSETMTRSSLNLTIVATV 260 Thiorhodovibrio sp...
Feature 1     ###### ########           ##  ##           #  #    
EDM60670  259 FLPTSFLTGLLGINIGGMPGVESSMAFTWFCIALivIFGLEWLLFKRLGFT 309 Vibrio parahaemolyticus AQ3810
ACB35872  311 ALPINIIAGLLGMNVGGIPLAEHAHGFLIIVGIVitFMFVAGWWAFRKKND 361 Leptothrix cholodnii SP-6
EGV18692  275 FLPLTFITGLLGMNVAGIPDEHDPWGFWFVTSLSllVALLAWLVLRRRMHD 325 Thiocapsa marina 5811
EIC20769  261 FLPLTFITGLLGMNVAGIPDQHNPFGFWTVTGLSvlVALLAWVLLRREIHD 311 Thiorhodovibrio sp. 970

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