Conserved Protein Domain Family
EcCorA_ZntB-like

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cd12821: EcCorA_ZntB-like 
Escherichia coli CorA-Salmonella typhimurium ZntB_like family
A family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of this family are found in all three kingdoms of life. It is a functionally diverse family, including the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs (which can also transport Co2+, and Ni2+ ), and the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). It also includes two Saccharomyces cerevisiae members: the inner membrane Mg2+ transporters Mfm1p/Lpe10p, and Mrs2p, and a family of Arabidopsis thaliana members (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.
Statistics
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PSSM-Id: 213355
Aligned: 25 rows
Threshold Bit Score: 174.814
Created: 20-Jul-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Comment:based on Thermotoga maritima CorA and on partial structures: the intracellular domains of Vibrio parahaemolyticus and Salmonella typhimurium ZntB; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                               #  ##          # #                                    
EDM60670   30 WYHCErlh-pdIRSWLEDn----HVPRATVDHllad-esrPSFHPLdd--dNFMLILRginmnenaspedmlSIRILYfq 101 Vibrio parahaemoly...
Q01926     75 IISMSek--fpKWSFLTEh---sLFPRDLRKIdnssidiiPTIMCKp---nCIVINLL--------------HIKALIer 132 Saccharomyces cere...
P0ABI6     28 WIDLVepdddeRLRVQSElgqslATRPELEDIea-----sARFFEDd---dGLHIHSFfffedae-dhagnsTVAFTIrd 98  Escherichia coli s...
ACL09897   28 WHDVTtpsrddLGRFLAPy----DLPDDVTEAcl----apRRYPEVsvfpsGIMVHLPtrhdwi---alhgrYLTVLClp 96  Desulfovibrio vulg...
ABM27821   57 WYDMDid--mdDDPTPALtg-lgLPPHILESCla-----tRRFPETeafagGVLLHMPvrqq-------wnaPRATYLtl 121 Desulfovibrio vulg...
EGW42104   31 WLDIQgts-eeLTHFLKErq--iPPFLRRRVLs------sQRFPSVfs--gNDYVLLSvparktw-vqkrsvSITFILfa 98  Bilophila sp. 4_1_30
CAJ54153   24 WYDIAgskndlITFLDNL-----SISPEISEIaien-qpfPEATVF-----STCAILRlpirsew-sipdceYVTFLIfp 91  Lawsonia intracell...
ADY58390   34 WIDIEaa---tPRELEELla-pfHLRPEMLAAcl----tpERSERMlsqknALYMEVPthlgwd---qlekpYVSFLClk 102 Planctomyces brasi...
ACB35872   75 WLHFNlad-kaAERWLAEh---tDLAEAFFDTlrgg-lhsTRVERVe---qTLLAVVNdlqfdfafepsdtaTLWICLnr 146 Leptothrix cholodn...
EGV18692   39 WTDIDisd-erERDWLRSw---aQLGEDTKSLllgp-vrfSHSEPVh---eGVLLSLKavrgdkadgfdqptDFRLLIgk 110 Thiocapsa marina 5811
Feature 1                           #   #                 #  #   #   #  ##  #  ## ##  #       
EDM60670  102 ----gALISTRKIPs---RAIMEIRQAlaeh------kgpkSLASLLNQIIEGLNGKIDLYLDTIEETLNEFDVNDe--- 165 Vibrio parahaemoly...
Q01926    133 ----dKVYVFDTTNpsaaAKLSVLMYDlesklsstknnsqfYEHRALESIFINVMSALETDFKLHSQICIQILNDLenev 208 Saccharomyces cere...
P0ABI6     99 ----gRLFTLREREl---PAFRLYRMRarsqs-----mvdgNAYELLLDLFETKIEQLADEIENIYSDLEQLSRVImegh 166 Escherichia coli s...
ACL09897   97 ----gRMITLHDEHi---PLLDKLVQMirsgn----aplqaSVQALLIFLLDACIDANVHFYMEARTHVEQLAELLddtp 165 Desulfovibrio vulg...
ABM27821  122 lmlagKVVSLHRAPl---PVTVKTAQRltmgd----aphlgLARDLFLYLLEAVIETNIQNFVEARSHIEELSRTLdetp 194 Desulfovibrio vulg...
EGW42104   99 ----qEVITLCRDEg---YNFDGERKQlaegd----tasirSASDLLIALLDSLVETNICNFIEARSQTENLSLHVdnas 167 Bilophila sp. 4_1_30
CAJ54153   92 ----dRLVTLHQSQv---SLLVQLRIQyqkntm---dedvkSIPTLISYILDNLIDANIRCFTRARLTTEEFGEKVdlat 161 Lawsonia intracell...
ADY58390  103 ----tTVITIHRDKl---HTIEDVIRDldgdv----plyanSSPAMLYYLLVEIGKQTVNAALKVREAAEQLDHAChenp 171 Planctomyces brasi...
ACB35872  147 ----rLVVTGRRKPl---RSVDQLRVSvrdg------epvrSSADLLAQLLRHQVDVLGDLARQMTNRVDEVEDRLlsgr 213 Leptothrix cholodn...
EGV18692  111 ----tDAVTVRSGSa---APVDELRRYlrsn------sslkTPVDLLAFMISGMTKRLETVIFDLTMATDALEDQLldvg 177 Thiocapsa marina 5811
Feature 1             ## ##  ##  ## ##   # ##  ##  ##                       ## ##  ## ##  ## #
EDM60670  166 -------STYNHIAAQKALISIKRFIRPQQYAIRDLIESesel--------------vtsRPHQYRFAHNNITRINETIE 224 Vibrio parahaemoly...
Q01926    209 ----nrlKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENdddlanmyltvkkspkdnfsdLEMLIETYYTQCDEYVQQSE 284 Saccharomyces cere...
P0ABI6    167 qgdeydeALSTLAELEDIGWKVRLCLMDTQRALNFLVRKarl---------------pggQLEQAREILRDIESLLPHNE 231 Escherichia coli s...
ACL09897  166 ----davSPDDILPLKRAITRLSIQFEDQFYCLATLQTLqatal------------pltsQREGLRDIMDNQSHLARSQA 229 Desulfovibrio vulg...
ABM27821  195 ----davGVDDILPFKRNVARLTVQHEEQFYCLTALQGIfagga------------pnaqRDPRLRDMLDTQAHLARSAD 258 Desulfovibrio vulg...
EGW42104  168 ----gkiSEQTILDTRRQINHLVNQFEDFFYGLADLHALtpham------------lsdaVREKLRDIRDAQNHLAKNTL 231 Bilophila sp. 4_1_30
CAJ54153  162 ----vviKEQDAVNVRRQVSQLLSQFEDQFYALTNLETQhtkka------------flneLYDTLKDSIEAQGHLVRSLT 225 Lawsonia intracell...
ADY58390  172 ----eaiDPQKIAVLRRKISHYAAVHDDHAYCTGVLQTVesaaf------------rfseQARYFGDTLQLSGLAGQIIA 235 Planctomyces brasi...
ACB35872  214 ----lehKRARLGAMRRLLVRLQRLLLPEPAALFRLLQHpppw-------------mtetDVQDLRDATEEFSVVLRDMV 276 Leptothrix cholodn...
EGV18692  178 ----tapPPEALIGLQQRVFRARRQIKTVQQVLSPIATDpava-------------lasrDRETLARSSNHVNRYIEALD 240 Thiocapsa marina 5811
Feature 1     # ###  ######## ############# ### ###### ####   ####           ##  ##           
EDM60670  225 FYLGEVALFQDEIKHNRDEKTNKNSYLFTLVATIFLPTSFLTGLL---GINIGgMPGVESSMAFTWFCIALi----vIFG 297 Vibrio parahaemoly...
Q01926    285 SLIQDIKSTEEIVNIILDANRNSLMLLELKVTIYTLGFTVASVLPafyGMNLK-NFIEESEWGFTSVAVFSivsalyITK 363 Saccharomyces cere...
P0ABI6    232 SLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSY---GMNFEfMPELKWSFGYPGAIIFMi----lAGL 304 Escherichia coli s...
ACL09897  230 RLEMRLRDLYQFYLLVLQRRTDHRIRVLTVLTAVCMPLSVIAGIY---GMNFRhMPELDWDYGYYVALGGMl----aVAG 302 Desulfovibrio vulg...
ABM27821  259 RMEYRLRDMQQHCHYVMQERTEQRLRILTILSSIYMPLTLIAGIY---GMNFKaMPELDWEYGYFAVLGLMa----aTAA 331 Desulfovibrio vulg...
EGW42104  232 RLVTRLSELLQHCQFVLQQQTDQRLRQLTVLSAIFMPLTLITGVY---GMNFAyMPETGWRYGYYATLAGMv----wLAI 304 Bilophila sp. 4_1_30
CAJ54153  226 HLEMRLRDIQQFYQYLMERKTEQRLRQLTVLSTVYMPLTLITSIY---GMNFEnMPGIGWEYGYFVLLGLMv----lISG 298 Lawsonia intracell...
ADY58390  236 GTADRVASLQRDYDALVQSRVESRLQFLTILSAVFLPLTLISGLY---GMNFNdLPGMGIKSGYLIVIGFMl----aTAV 308 Planctomyces brasi...
ACB35872  277 ALQERVKLLQEEVAAQVNEQTGRSLFVLTVVTVLALPINIIAGLL---GMNVGgIPLAEHAHGFLIIVGIVi----tFMF 349 Leptothrix cholodn...
EGV18692  241 DCRTRLRMLEDQIEAQRAESMTRSSLELTVVATVFLPLTFITGLL---GMNVAgIPDEHDPWGFWFVTSLSl----lVAL 313 Thiocapsa marina 5811
Feature 1         #  #   
EDM60670  298 LEWLLFKRLGF 308 Vibrio parahaemolyticus AQ3810
Q01926    364 KNFNSLRSVTK 374 Saccharomyces cerevisiae S288c
P0ABI6    305 APYLYFKRKNW 315 Escherichia coli str. K12 substr. W3110
ACL09897  303 GMMWFFHKRGW 313 Desulfovibrio vulgaris str. 'Miyazaki F'
ABM27821  332 GLLWFFRRRGW 342 Desulfovibrio vulgaris subsp. vulgaris DP4
EGW42104  305 FLWITLKRKGW 315 Bilophila sp. 4_1_30
CAJ54153  299 ILIYFFYRKGW 309 Lawsonia intracellularis PHE/MN1-00
ADY58390  309 FTASYFYLRGW 319 Planctomyces brasiliensis DSM 5305
ACB35872  350 VAGWWAFRKKN 360 Leptothrix cholodnii SP-6
EGV18692  314 LAWLVLRRRMH 324 Thiocapsa marina 5811

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