1P9H,3S6L,3PR7,3PR7,3PR7,3S6L


Conserved Protein Domain Family
LbR_YadA-like

?
cd12820: LbR_YadA-like 
Click on image for an interactive view with Cn3D
YadA-like, left-handed beta-roll
This group contains the collagen-binding domain virulence factor YadA an adhesion proteins of several Yersinia species, and related cell surface proteins, including Moraxella catarrhalis UspA-like proteins. The collagen-binding portion is found in the hydrophobic N-terminal region. YadA forms a matrix on the bacterial outer membrane, which mediates binding to collagen and epithelial cells. YadA inhibits the complement-activating pathway with the coating of the cell surface with factor H, which impedes C3b molecules. These domains form a left handed beta roll made up of a series of short repeated elements. UspA1 and UspA2 are part of a class of pathogenicity factors that act as cell surface adhesion molecules, in which N-terminal head and neck domains extend from the bacterial outer membrane. The UspA1 head domain of Moraxella catarrhalis, is formed from trimeric left-handed parallel beta-helices of 14-16 amino acid repeats. The UspA1 head domain connects to a neck region of large extended, charged loops that maybe be ligand binding, which is in turn connected to an extended coiled coil domain that tethers the head and neck region to the cell surface via a transmembrane region.
Statistics
?
PSSM-Id: 240612
Aligned: 141 rows
Threshold Bit Score: 64.4389
Created: 21-Aug-2012
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
trimer
Conserved site includes 46 residues -Click on image for an interactive view with Cn3D
Feature 1:trimer interface [polypeptide binding site]
Evidence:
  • Structure:1P9H: Yersinia enterocolitica YadA Collagen-binding domain trimerizes; contacts at 4A
  • Structure:3S6L: Burkholderia pseudomallei YadA-like head domain forms homotrimers; contacts at 4A

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1         # #  ##       #    ##       # # ###       # # ###       # # ###       # # ###   
1P9H_A         56 HSIAIGATAEAAKgAAVAVGAGSIATGVNSVAIGPlSKALGdSAVTYGAaSTAQK-DGVAIGARASTS-DTGVAVGFnSK 133  Yersinia ente...
ZP_03823362   104 GGTAVGNNITIHDsQSTAVGGNSDVKGQYASAFGDsVTVDGtGATAIGStSEATGeYATSLGFGAKATaDNAIATGSnAV 183  Acinetobacter...
ADU91929      219 DATAIGGHNEAADeYSTAVGYFNKAQGQWSSALGSaNSAIGfASSALGHsSSALGqQSTAVGYKSIATtDGSTAIGSeSE 298  Taylorella eq...
YP_003306573   85 NVVAIGYKNIVGEsNSVALGAWNQASGSSSIAIGMeSNSIGkDSVAVGRkAGSKGeNSVAFGNDVKAIgKNSSVFGLgSK 164  Streptobacill...
YP_003305591   26 KSIAIGDEANASAkYSIAIGRNSKSESEKSIAFGSeANSKGkYSIALGTeANSSGkTSIAIGRNSKSEsEKSIAFGSgAN 105  Streptobacill...
ZP_06158124   118 LAEAIGVGANATGdRSVAIGNQGKAEGTEAVAIGKgANASKaSAVALGQgAQATGnRASAIGQNSKATqDDTIALGTnSK 197  Neisseria cin...
EGT77210      125 RATAVGDSARARGaGSSAIGYNTLATKDSAVALGNqATAEGnSSVAVGHgSEAKGdKSTALGSASHALgELTIAIGSnAR 204  Haemophilus h...
EGQ44107      138 DTVAIGEDATANGnQSTAVGRGTEALKQSASAFGQgTKANGaATTVVGQgVTVEAdNATSIGTGVDVTgDGATGVGRgTI 217  Candidatus Na...
YP_580490     821 NATAIGVNAKALGeRSVAIGEGAQATTLTGTAIGSrTRATGiQSTAVGVgSKATKqWSTAMGFVSEANgLSSVALGDrSI 900  Psychrobacter...
ZP_08541804   231 QAFAFGKEVKAMGeNSVAMGEKSEAWATNSFAVGNtAKAQDvGAIAMGNnATASGkSSFAAGVKSKATaYSTVALGDnAA 310  Megasphaera s...
Feature 1             # # ###         # # ##   # ##  ######   #   
1P9H_A        134 ADAkNSVAIGHSSHVAANhgYSIAIGdRSKTDRenSVSIGHESLNRQL 181  Yersinia enterocolitica
ZP_03823362   184 ASGeNSIAIGSGAEASSE--GGVAIGaGAKVTGanSVAIGANTVADED 229  Acinetobacter sp. ATCC 27244
ADU91929      299 ATGeSSLAIGNKSIAYGD--ESSAVGfKNEASGyhSTAFGHNNIANTN 344  Taylorella equigenitalis MCE9
YP_003306573  165 SSGaNSLALGNKIDAMSD--DSIAIGnGGYAGGksSVSIGNNTKSSGT 210  Streptobacillus moniliformis DSM 12112
YP_003305591  106 SKGkYSIALGTEANSSGK--SSIAIGrNSKSESekSIAFGNGANSNRK 151  Streptobacillus moniliformis DSM 12112
ZP_06158124   198 STNtYTVALGRNTDAAGQ--RSMAFGnEAKATAndTIAFGSSSEAKKN 243  Neisseria cinerea ATCC 14685
EGT77210      205 ANNkSSIAVGEDAFVSGD--RSVGIGyNTKIFGdqSYVFGMSARVGQY 250  Haemophilus haemolyticus M19501
EGQ44107      218 ATAqDSTAIGNGAEANGV--NSVAIGtGSTANRdnVYSFGDRDVNLPL 263  Candidatus Nanosalina sp. J07AB43
YP_580490     901 VGGkESIAIGKGNTVNGA--NSIAVGtGHIVSGnnSGAFGDPNIVSGM 946  Psychrobacter cryohalolentis K5
ZP_08541804   311 AAGnYAVAMGHKAKATEE--NSSAVGaWAKATGeySSALGASSKALGF 356  Megasphaera sp. UPII 199-6

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap