Conserved Protein Domain Family
LbR_vir_like

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cd12819: LbR_vir_like 
Cell adhesion-like domain, left-handed beta-roll
This group contains proteins of unknown function related to characterized cell surface adhesion proteins with a left-handed beta-roll, like the UspA1 Head And Neck Domain and YadA of Yersinia. UspA1 and UspA2 are part of a class of pathogenicity factors that act as cell surface adhesion molecules, in which N-terminal head and neck domains extend from the bacterial outer membrane. The UspA1 head domain of Moraxella catarrhalis, is formed from trimeric beta-helices of 14-16 amino acid repeats. The UspA1 head domain connects to a neck region of large extended, charged loops that maybe be ligand binding, which is in turn connected to an extended coiled coil domain that tethers the head and neck region to the cell surface via a transmembrane region. The collagen-binding domain virulence factor YadA an adhesion proteins of several Yersinia species, and related cell surface proteins. The collagen-binding portion is found in the hydrophobic N-terminal region. YadA forms a matrix on the bacterial outer membrane, which mediates binding to collagen and epithelial cells. YadA inhibits the complement-activating pathway with the coating of the cell surface with factor H, which impedes C3b molecules. These domains form a left handed beta roll made up of a series of short repeated elements.
Statistics
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PSSM-Id: 240611
Aligned: 18 rows
Threshold Bit Score: 81.933
Created: 24-Aug-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative trimer
Feature 1:putative trimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
BAC88191      118 GTVADAAYATVSGGf-GNDATAYAATVGGGy------GNSALQsdASVAGGSfNLADGt--------GAGVAGGl-FNDA 181  Gloeobacter v...
ADH65158      154 SPNLIGGFGGTSGPgnRVTAGVFGAVIGGGgsa-kfgHNEVTDhqGTVAGGAgNRAGNndgdlnnarFSTVSGGf-GNQA 231  Meiothermus s...
XP_002585575 1110 NKPQQDNGATAAASt-KLASTGGTDAVASG-------SDVVAGgsDEVAGGSdVVAGG---------SDVVAGG--SDEV 1170 Florida lancelet
EIQ00388      785 NSNASGNNSLAAGGy-RSTASGSGSVALGGe------YSYATGd-YSITGGGrNVAASg-------eGSASLGGd-MNHA 848  Opitutaceae b...
EFG25279      129 VGTLVGNYATISGGe-DNIAYGESSSISGGn------ANGTYGlhSSIAGGRgNNAGGe--------IGSVIGGs-QNNA 192  Veillonella s...
EEH90851       92 NIASGRNSIVVSGS--TNTASGENASIMGGn------TNTASGtnSTIIGGSnNKNGAa--------NGIIIGGnqHELT 155  Acidaminococc...
BAJ62341      239 EIKSSGDFATISGGk-INTADGNGATISGGt------ANTANGqaVVIGGGNiNTAVGy--------AATVSGGg-NNQA 302  Anaerolinea t...
ABX04832      319 SNTASDDYSTVAGGy-NNSAAAQYATISGGgnsnsaqANRVYDdyGTIGGGTnNVAGVtgdt-tgqqYATVGGGn-GNTA 395  Herpetosiphon...
ABX07727      336 SISAIADYSVISGGy-NNVATGLYATVSGGgsassgqGNRAYDnySTVAGGYnNVAGIddsi--gqpFTTVAGGg-SNTA 411  Herpetosiphon...
ACS15398      121 DDLESDEFATVAGGl-LNEASGSYSTIGGGt------GNEASGyaSSVGGGTnSIANAt--------GATVAGGn-SNRA 184  uncultured ba...
Feature 1            # # ###           # # ###        # # ##       
BAC88191      182 VDDYAAVGGGYgNLASGy--lSTIAGGYFGEATGsYSAILGGyFNEATS 228  Gloeobacter violaceus PCC 7421
ADH65158      232 SGFEATVEGGAfNAASGa--eSVVPGGFGNTASG-SFSFAAGrRAKAQH 277  Meiothermus silvanus DSM 9946
XP_002585575 1171 AGGNDVVAGGS-DVVAGg--sEVVAGGSDVVAGG-SDVVAGG-TDVEVG 1214 Florida lancelet
EIQ00388      849 IGDFSFIGGGRwATVTGr--gAVSLGGEGNEVFG-DYSLASGfNNYAHG 894  Opitutaceae bacterium TAV1
EFG25279      193 DGHGSTLAGGLgNTGVGm--wSSVFGGSKNEAVGtGASILGGgGRQFTG 239  Veillonella sp. 6_1_27
EEH90851      156 SGTDTVFVGGTvNKSSGnanqSVLIGGTKNTVGGrQAGIFGGtYNMTAG 204  Acidaminococcus sp. D21
BAJ62341      303 LKDGDTVGGGMnNTANGs--nSVISGGAYNTTTAvMAAIPGGyRAKADH 349  Anaerolinea thermophila UNI-1
ABX04832      396 SEDGATVAGGSgNSASAn--yTTVAGGTTNAASGdTSSIGGGqLNAASG 442  Herpetosiphon aurantiacus ATCC 23779
ABX07727      412 SGYASAIGGGRlNQASGq--yAFIGGGESNTATGdHTTIGAGrQNTANG 458  Herpetosiphon aurantiacus ATCC 23779
ACS15398      185 TGEGATVAGGWgNFATGe--eSMVPGGAVNNAIG-DHSFAAGfYAQADH 230  uncultured bacterium FLS12

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