1L3P,1NLX


Conserved Protein Domain Family
Allergen_V_VI

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cd12805: Allergen_V_VI 
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Group V, VI major allergens from grass, including Phlp 5, Phlp 6, Pha a 5 and Lol p 5
This family contains major allergens from various grass pollen, including Phl p 5 and Phl p 6 (timothy grass), Lol p 5 (rye grass) and Pha a 5 (canary grass). They induce allergic rhinitis and bronchial asthma in millions of allergic patients worldwide. These group V and group VI grass-pollen allergens belong to a new class of protease-resistant four-helix-bundle domains, which also have internal helix-turn-helix homology pointing to a special type of four-helix bundle topology, defined as twinned two-helix bundle. IgE binding experiments with recombinant Phl p 6 fragments indicated that the N terminus of the allergen is required for IgE recognition. Immunotherapy treatment for these allergies generally involves administration of grass pollen extracts which induce an initial rise in specific immunoglobulin E (sIgE) production followed by a progressive decline during the treatment.
Links
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Statistics
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PSSM-Id: 214004
Aligned: 13 rows
Threshold Bit Score: 47.4815
Created: 18-Oct-2012
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1L3P_A         7 QIIDKIDAAFKVAATAAatapADDKFTVFEAAFNKAIKETtggayd-----------tykciPSLEAAVKQAYAATVaaa 75  timothy grass
P56164        48 RSVEDINAASRRPWWASv--pPADKFKTFADHVLCVPNADvtsaat----------kapqlkAKLDAAYRVAYEAAEgst 115 canary grass
Q40962        40 KLIEKINAGFKAALAGAgv-qPADKYRTFVATFGPASNKAfaeglsgepkgaaessskaaltSKLDAAYKLAYKTAEgat 118 timothy grass
P22284       185 VLTSKLDAAYKLAYKSAegatPEAKYDAYVATLSEALRIIagtle------------vhgvkPAAEEVKAIPAGELQvid 252 Kentucky bluegrass
P22285       238 KFIPALEAAVKQSYAATvataPAVKYTVFETALKKAITAMsqaq---------------kaaKPAAAVTATATGAVGaat 302 Kentucky bluegrass
P56165       217 KFIPTLEAAVKQAYAASsataPEVKYAVFETALKKAISAMseaq---------------keaKPAAAISAATTTISA--- 278 canary grass
Q40237       239 KFIPTLVAAVKQAYAAKqataPEVKYTVSETALKKAVTAMseae---------------keaTPAAAATATPTPAAAtat 303 perennial ryegrass
P56164       207 KFIPSLEAAVKQAYGATvaraPEVKYAVFEAGLTKAITAMseaq---------------kvaKPPLSPQPPQVLPLAa-- 269 canary grass
P56166        53 KLIEDINAAFKWWPASAp---PADKYKTFETAFSKANIAGas-------------------tKGLDAAYSVVYNTAAgat 110 canary grass
1NLX_A        10 KLIEDVNASFRAAMATTanvpPADKYKTFEAAFTVSSKRNladavs----------kapqlvPKLDEVYNAAYNAADhaa 79  timothy grass
NP_001175828  92 KKVAATSLAYKKAAKAVldaaPADKFKLMDESFKVAVMQAlla----------------tvdKRLDEAAQAINEAADsvv 155 Japanese rice
BAK04544      83 KKVDEIVTAYKTAANAVlaakPADKSAVFEKTFGEAGHPAthq-----------------avDSLEDSFKQAIDDVVaaa 145 domesticated ba...
CAE53906       6 NVMEQVNNAFKAAVAAAavvpGPDKYKKFTDTYIPDVDRAiadvfkg--------snastftAKIGMAQKLAYDSADgat 77  bread wheat
1L3P_A        76 ----pqvKYAVFEAALTKAITAMS 95  timothy grass
P56164       116 ----peaKYDAFIAALTEALRVIA 135 canary grass
Q40962       119 ----peaKYDAYVATLSEALRIIA 138 timothy grass
P22284       253 kv-daafKVAATAANAAPANDKFT 275 Kentucky bluegrass
P22285       303 -----gaVGAATGAATAAAGGYKT 321 Kentucky bluegrass
P56165       279 -------STATPAAPPPPQLGTAT 295 canary grass
Q40237       304 atpaaayATATPAAATATATPAAA 327 perennial ryegrass
P56164       270 -------GGAATVAAASDVRVCRS 286 canary grass
P56166       111 ----peaKYDSFVTALTEALRIMA 130 canary grass
1NLX_A        80 ----pedKYEAFVLHFSEALRIIA 99  timothy grass
NP_001175828 156 aa-appaKKDEVEAATWKRRMFAI 178 Japanese rice
BAK04544     146 ----pspKQDEMKALVFQQTVLAA 165 domesticated barley
CAE53906      78 ----peaKYDSFIAILSESLRIIA 97  bread wheat
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