2MQM


Conserved Protein Domain Family
RRM2_hnRNPL

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cd12785: RRM2_hnRNPL 
Click on image for an interactive view with Cn3D
RNA recognition motif 2 (RRM2) found in vertebrate heterogeneous nuclear ribonucleoprotein L (hnRNP-L)
This subgroup corresponds to the RRM2 of hnRNP-L, a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-L shows significant sequence homology to polypyrimidine tract-binding protein (PTB or hnRNP I). Both hnRNP-L and PTB are localized in the nucleus but excluded from the nucleolus. hnRNP-L is an RNA-binding protein with three RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain).
Statistics
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PSSM-Id: 410177
Aligned: 7 rows
Threshold Bit Score: 198.735
Created: 14-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative RNA
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on sequence similarity to Homo sapiens polypyrimidine tract binding protein.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               # #                          # # #   # #                            #  ##
2MQM_A        13 RSVNSVLLFTILNpiysiTTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYsgCCTLKIEYA 92  Norway rat
AAD34009     139 RGVNNVLLLTILNpiysiTTDVLYTICNPCGPVERIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYsgCCTLKIEYA 218 African clawed ...
P14866       189 RSVNSVLLFTILNpiysiTTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYsgCCTLKIEYA 268 human
OWK51039     179 RGVNNVLLFTILNpiysiTTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYsgCCTLKIEYA 258 Bengalese finch
XP_014349233 141 RSVNGVLLFTILNpiypiTTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYsgCCTLKIEYA 220 coelacanth
NP_998548    129 RSVNNVLLLTIMNpiypiTSDVLYTICNNCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYsgCCTLKIEYA 208 zebrafish
XP_007882965 148 RNVNNILLFTVINpvypvTTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYsgCCTLKIEYA 227 elephant shark
Feature 1            #####           
2MQM_A        93 KPTRLNVFKNDQDTWDYTNP 112 Norway rat
AAD34009     219 KPSRLNVFKNDQDTWDYTNP 238 African clawed frog
P14866       269 KPTRLNVFKNDQDTWDYTNP 288 human
OWK51039     259 KPSRLNVFKNDQDTWDYTNP 278 Bengalese finch
XP_014349233 221 KPTRLNVFKNDQDTWDYTNP 240 coelacanth
NP_998548    209 KPTRLNVFKNDQDTWDYTNP 228 zebrafish
XP_007882965 228 KPTRLNVFKNDPDTWDYTNP 247 elephant shark

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