Conserved Protein Domain Family
RRM2_PTBP2

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cd12783: RRM2_PTBP2 
RNA recognition motif 2 (RRM2) found in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)
This subgroup corresponds to the RRM2 of PTBP2, also known as neural polypyrimidine tract-binding protein or neurally-enriched homolog of PTB (nPTB), highly homologous to polypyrimidine tract binding protein (PTB) and perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. PTBP2 contains four RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain).
Statistics
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PSSM-Id: 410175
Aligned: 7 rows
Threshold Bit Score: 215.644
Created: 14-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative RNA
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on sequence similarity to Homo sapiens polypyrimidine tract binding protein.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            # #                          # # #  # # #                            #  ####
Q9UKA9       178 SPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKL 257 human
NP_001072479 178 SPVLRIIIDNMYYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKL 257 western clawed ...
NP_001093477 172 SPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVNAQQAKLSLDGQNIYNSCCTLRIDFSKL 251 zebrafish
PKK27820     178 SPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKL 257 rock pigeon
OCT85137     139 SPVLRIIIDNMYYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYGEPVNAQQAKLALDGQNIYNACCTLRIDFSKL 218 African clawed ...
XP_007885298 185 SPVLRIIIDNMYYPVTLDVLYQIFSKFGSVMKIITFTKNNQFQALLQYSEPLNAQQAKLSLDGQNIYNACCTLRIDFSKL 264 elephant shark
XP_014349789 178 SPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYADPMNAQQARLALDGQNIYNACCTLRIDFSKL 257 coelacanth
Feature 1          ##### ###                
Q9UKA9       258 VNLNVKYNNDKSRDYTRPDLPSGDGQP 284 human
NP_001072479 258 VNLNVKYNNDKSRDYTRPDLPSGDGQP 284 western clawed frog
NP_001093477 252 VNLNVKYNNDKSRDYTRPELPAGDGQP 278 zebrafish
PKK27820     258 VNLNVKYNNDKSRDYTRPDLPSGDGQP 284 rock pigeon
OCT85137     219 VNLNVKYNNDKSRDYTRPDLPSGDGQP 245 African clawed frog
XP_007885298 265 VNLNVKYNNDKSRDYTRPELPAGDGQP 291 elephant shark
XP_014349789 258 VNLNVKYNNDKSRDYTRPELPAGDGQP 284 coelacanth

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