Conserved Protein Domain Family
RRM1_ROD1

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cd12779: RRM1_ROD1 
RNA recognition motif 1 (RRM1) found in vertebrate regulator of differentiation 1 (Rod1)
This subgroup corresponds to the RRM1 of ROD1 coding protein Rod1, a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein that negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. Rod1 contains four repeats of RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain) and does have RNA binding activities.
Statistics
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PSSM-Id: 410171
Aligned: 6 rows
Threshold Bit Score: 201.018
Created: 14-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative RNA
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on sequence similarity to Homo sapiens polypyrimidine tract binding protein.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 # ##                       # #  ### #                              #####
O95758         54 PCSPSRVLHLRKIPcDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTpitphlRSQPVYIQYSNH 133  human
NP_001120518   23 PCSPSRVLHIRKIPnDVTESEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVSMVNYYTpvpphvRSQPVYIQYSNH 102  western clawe...
EMP33475       15 PCSPSRVLHLRKIPnDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTpvtphlRSQPVYIQYSNH 94   Green sea turtle
KTG35008       49 PCGPSRVLHVRKVPiEVSEAEVISLGVPFGKVTNLLMLKGKNQAFIEMASEEAAITMVNYYTtatphvRNQPVYIQYSNH 128  common carp
XP_007904702   45 PSSPSRVLHIRKIPnEVSETEVLSLGLPFGKVTNLLMLKGKNQAFVEMASEEAAVTMVNYYTtvtphlRNQPIYIQYSNH 124  elephant shark
XP_014342434   54 PCSPSRVLHIRKIPsDVAEAEVISLGLPFGKVTNLLMLKGKNQAFLEMASEEAAATMVNYCTtvtphlRNQPVYIQYSNH 133  coelacanth
Feature 1           ###     
O95758        134 RELKTDNLPN 143  human
NP_001120518  103 RELKTDNLPN 112  western clawed frog
EMP33475       95 RELKTDNLPN 104  Green sea turtle
KTG35008      129 RELKTDNLLN 138  common carp
XP_007904702  125 RELKTDNLPN 134  elephant shark
XP_014342434  134 RELKTDNLPN 143  coelacanth

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