1FNX,1D9A


Conserved Protein Domain Family
RRM2_HuC

?
cd12776: RRM2_HuC 
Click on image for an interactive view with Cn3D
RNA recognition motif 2 (RRM2) found in vertebrate Hu-antigen C (HuC)
This subgroup corresponds to the RRM2 of HuC, also termed ELAV-like protein 3 (ELAV-3), or paraneoplastic cerebellar degeneration-associated antigen, or paraneoplastic limbic encephalitis antigen 21 (PLE21), one of the neuronal members of the Hu family. The neuronal Hu proteins play important roles in neuronal differentiation, plasticity and memory. Like other Hu proteins, HuC contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 may cooperate in binding to an AU-rich RNA element (ARE). The AU-rich element binding of HuC can be inhibited by flavonoids. RRM3 may help to maintain the stability of the RNA-protein complex, and might also bind to poly(A) tails or be involved in protein-protein interactions.
Statistics
?
PSSM-Id: 241220
Aligned: 6 rows
Threshold Bit Score: 165.943
Created: 15-Sep-2011
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Structure:1FNX; Mouse HuC protein RMM1/2 in complex with the AU-rich element, contacts at 4A.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1        # # #                       ## # #        # # # #                             ##
1FNX_H        90 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 169 house mouse
Q91584       119 DANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFA 198 African clawed ...
NP_990163    135 DANLYVSGLPKAMGQKEMEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRVEAEEAVRGLHGQKPLGATEPITVKFA 214 chicken
NP_571524    123 DANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVNQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFA 202 zebrafish
1D9A_A         1 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 80  house mouse
XP_005994176 116 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFA 195 coelacanth
Feature 1        #
1FNX_H       170 N 170 house mouse
Q91584       199 N 199 African clawed frog
NP_990163    215 N 215 chicken
NP_571524    203 N 203 zebrafish
1D9A_A        81 N 81  house mouse
XP_005994176 196 N 196 coelacanth

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap