Conserved Protein Domain Family
RRM2_HuB

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cd12775: RRM2_HuB 
RNA recognition motif 2 (RRM2) found in vertebrate Hu-antigen B (HuB)
This subgroup corresponds to the RRM2 of HuB, also termed ELAV-like protein 2 (ELAV-2), or ELAV-like neuronal protein 1, or nervous system-specific RNA-binding protein Hel-N1 (Hel-N1), one of the neuronal members of the Hu family. The neuronal Hu proteins play important roles in neuronal differentiation, plasticity and memory. HuB is also expressed in gonads. It is up-regulated during neuronal differentiation of embryonic carcinoma P19 cells. Like other Hu proteins, HuB contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 may cooperate in binding to an AU-rich RNA element (ARE). RRM3 may help to maintain the stability of the RNA-protein complex, and might also bind to poly(A) tails or be involved in protein-protein interactions.
Statistics
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PSSM-Id: 410168
Aligned: 5 rows
Threshold Bit Score: 174.523
Created: 23-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative RNA
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on similarity to the sequence of Homo sapiens HuR protein.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #                       ## # #        #   # #                           
Q12926       120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGiSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPIT 199 human
Q91903       148 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGvSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPIT 227 African clawed ...
NP_001002172 149 ASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGvSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPIT 228 zebrafish
KFZ68148      10 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGvSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPIT 89  great crested g...
XP_007890792 124 ASIRDANLYVSGLPKTMSQKELEQLFTQYGRIITSRILVDQVTGvSRGVGFIRFDKRVEAEEAIKGLNGQKPPGATEPIT 203 elephant shark
Feature 1         # #
Q12926       200 VKFA 203 human
Q91903       228 VKFA 231 African clawed frog
NP_001002172 229 VKFA 232 zebrafish
KFZ68148      90 VKFA 93  great crested grebe
XP_007890792 204 VKFA 207 elephant shark

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