Conserved Protein Domain Family
RRM1_ESRP1

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cd12736: RRM1_ESRP1 
RNA recognition motif 1 (RRM1) found in epithelial splicing regulatory protein 1 (ESRP1) and similar proteins
This subgroup corresponds to the RRM1 of ESRP1, also termed RNA-binding motif protein 35A (RBM35A), which has been identified as an epithelial cell type-specific regulator of fibroblast growth factor receptor 2 (FGFR2) splicing. It is required for expression of epithelial FGFR2-IIIb and the regulation of CD44, CTNND1 (p120-Catenin) and ENAH (hMena) splicing. It enhances epithelial-specific exons of CD44 and ENAH, silences mesenchymal exons of CTNND1, or both within FGFR2. Additional research indicated that ESRP1 functions as a tumor suppressor in colon cancer cells. It may be involved in posttranscriptional regulation of various genes by exerting a differential effect on protein translation via 5' untranslated regions (UTRs) of mRNAs. ESRP1 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains).
Statistics
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PSSM-Id: 410134
Aligned: 6 rows
Threshold Bit Score: 206.406
Created: 21-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6NXG1       216 SKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGtRYI 295 human
Q7ZY29       217 SKLEMIDDNTIIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGnRYI 296 African clawed ...
A1L1G1       216 SKMERVDDNTVIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLALQRHKHHMGgRYI 295 zebrafish
XP_418338    216 SKMELVDDNAVIRARGLPWQSSDQDIAKFFKGLNIAKGGAALCLNAQGRRNGEALVRFVNEEHRDLALQRHKHHMGnRYI 295 chicken
XP_006003504 173 SKTEIIDDNTIIKARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVNEEHRDLALQRHKHHMGnRYI 252 coelacanth
XP_007886113 145 SKMEIIDDNTIVRARGLPWQSSDQDVARFFRGLNIAKGGAALCLNSQGRRNGEALVRFVNEEHRDLALQRHKHHMGnRYI 224 elephant shark
Q6NXG1       296 EVYKATGEDFLKI 308 human
Q7ZY29       297 EVYKATGEDFLKI 309 African clawed frog
A1L1G1       296 EVYKATGEDFLKI 308 zebrafish
XP_418338    296 EVYKATGEDFLKI 308 chicken
XP_006003504 253 EVYKATGEDFLKI 265 coelacanth
XP_007886113 225 EVYKATGEDFLKI 237 elephant shark
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