4QU7


Conserved Protein Domain Family
RRM3_GRSF1

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cd12733: RRM3_GRSF1 
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RNA recognition motif 3 (RRM3) found in G-rich sequence factor 1 (GRSF-1) and similar proteins
This subgroup corresponds to the RRM3 of G-rich sequence factor 1 (GRSF-1), a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 contains three potential RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), which are responsible for the RNA binding. In addition, GRSF-1 has two auxiliary domains, an acidic alpha-helical domain and an N-terminal alanine-rich region, that may play a role in protein-protein interactions and provide binding specificity.
Statistics
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PSSM-Id: 410132
Aligned: 8 rows
Threshold Bit Score: 139.515
Created: 21-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4QU7_A         2 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKAT-GEADVHFETHEDAVAAMLKDRshv--------------- 65  human
NP_001135339 319 HFVHMRGLPFQATGDDIVQFFSPLALSRILVEFGPDGRAS-GEADVYFTSHQDAVSAMTRDKahm--------------- 382 Atlantic salmon
NP_001121205 360 HDIHIRGLPFHASGQDIANFFHPIMPLKISIEYSADAGGAtGEAVVRFLTHDDAVAAMAKNRchs--------------- 424 African clawed ...
XP_002612455 278 HFVHMRGLPFKAASEDIEQFFQPLVPMKVQIHYGPDKRAT-GEADVEFASHDDAVAAMAKDKanmrkwkclscdnhsgin 356 Florida lancelet
Q12849       401 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKAT-GEADVHFETHEDAVAAMLKDRshv--------------- 464 human
KYO31930     302 HYVHLRGLPFQASAQDIINFLAPLKPVKITMEYNSSGKAT-GEADVHFKSHGDAVAAMVKDRshm--------------- 365 American alligator
XP_007890154 254 YNVHMRGLPFNANGQDVVKFFYPLTPLRIIMEYGPDGKAT-GEADVHFASHEDAVIAMSKNKsci--------------- 317 elephant shark
XP_006003791 349 HNIHMRGLPFQVTAQEIATFFYPVKPMRIYMEYGPDGRAT-GEADVMFKSHADAVASMAKDRahi--------------- 412 coelacanth
4QU7_A        66 ------hhRYIELFLNS 76  human
NP_001135339 383 ------qeRYIELFLNS 393 Atlantic salmon
NP_001121205 425 ------qhGYLELYLNS 435 African clawed frog
XP_002612455 357 glfsfpehRYIELFLDS 373 Florida lancelet
Q12849       465 ------hhRYIELFLNS 475 human
KYO31930     366 ------qhRYIELFLNS 376 American alligator
XP_007890154 318 ------qhRYIELFLNS 328 elephant shark
XP_006003791 413 ------qhRYIELYLNS 423 coelacanth
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