3TO8,3TYT,2MQN,4QPT,3S01


Conserved Protein Domain Family
RRM4_hnRNPL

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cd12704: RRM4_hnRNPL 
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RNA recognition motif 4 (RRM4) found in vertebrate heterogeneous nuclear ribonucleoprotein L (hnRNP-L)
This subgroup corresponds to the RRM4 of hnRNP-L, a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-L shows significant sequence homology with polypyrimidine tract-binding protein (PTB or hnRNP I). Both hnRNP-L and PTB are localized in the nucleus but excluded from the nucleolus. hnRNP-L is an RNA-binding protein with three RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain).
Statistics
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PSSM-Id: 410103
Aligned: 10 rows
Threshold Bit Score: 170.462
Created: 5-Jul-2012
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3TO8_A       128 PSNVLHFFNAPLevTEENFFEICDElgvkrPSSVKVFSGKseRSSSGLLEWESKsDALETLGFLNHyqmknpngpyPYTL 207 human
NP_957393    446 PSNVLHFFNSQPdsSVEAFSEICEElgiksPVSVKLFTGKvdRSSSGLLEWESVnDAMEALALMNHyqmknpsgpyPYTL 525 zebrafish
3TYT_A       122 PSNVLHFFNAPLevTEENFFEICDElgvkrPTSVKVFSGKseRSSSGLLEWDSKsDALETLGFLNHyqmknpngpyPYTL 201 house mouse
2MQN_A       126 PSNVLHFFNAPLevTEENFFEICDElgvkrPTSVKVFSGKseRSSSGLLEWDSKsDALETLGFLNHyqmknpngpyPYTL 205 Norway rat
4QPT_A       125 PSNVLHFFNAPLevTEENFFEICDElgvkrPTSVKVFSGKseRSSSGLLEWDSKsDALETLGFLNHyqmknpngpyPYTL 204 Norway rat
3S01_A       122 PSNVLHFFNAPLevTEENFFEICDElgvkrPTSVKVFSGKseRSSSGLLEWDSKsDALETLGFLNHyqxknpngpyPYTL 201 house mouse
POI19034     155 PSNVLHFFNAPLevTEENFYEICDElgvkrPSSVKVFSGKseRSSSGLLEWESKsDALETLGFLNHyqmknpngpyPYTL 234 Chinese bamboo-...
OCA25748     449 PSSVLHFFNAPPevTEENFIEMCDElgvkkPASIKIFSGKseRSSSGLLEWDSKsEALETLGLMNHyqmknpngpyPYTL 528 tropical clawed...
XP_007882965 454 PSNVLHYFNAPPevSEEAFYEVCDElilkrPVAFKLFSGKseRSSSGLIEWDSKnDAVEALALLNHfqmknpsgpyPYTL 533 elephant shark
XP_014349233 451 PSDVLHYFNAPPdvTEDHFYQVCEElelkkPSSTKLFAGKseRSSSGLLEWESQsDALETLALLNHyqmknpngpyPYIL 530 coelacanth
3TO8_A       208 KLCF 211 human
NP_957393    526 KLCF 529 zebrafish
3TYT_A       202 KLCF 205 house mouse
2MQN_A       206 KLCF 209 Norway rat
4QPT_A       205 KLCF 208 Norway rat
3S01_A       202 KLCF 205 house mouse
POI19034     235 KLCF 238 Chinese bamboo-partridge
OCA25748     529 KLCF 532 tropical clawed frog
XP_007882965 534 KLCF 537 elephant shark
XP_014349233 531 KLCF 534 coelacanth
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