2E5I,2MQM


Conserved Protein Domain Family
RRM2_hnRNPL_like

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cd12694: RRM2_hnRNPL_like 
Click on image for an interactive view with Cn3D
RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein L (hnRNP-L) and similar proteins
This subfamily corresponds to the RRM2 of heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), and similar proteins. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both nuclear and cytoplasmic roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. It is closely related in domain structure and sequence to hnRNP-L, which contains three RNA-recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain).
Statistics
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PSSM-Id: 410094
Aligned: 18 rows
Threshold Bit Score: 150.118
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative RNA
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on sequence similarity to Homo sapiens polypyrimidine tract binding protein.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            # #                          # # #    # #                            #  ##  
2E5I_A        23 NKVLLLSIQNplypiTVDVLYTVCNPVGkVQRIVIFKRn-gIQAMVEFESvLCAQKAKAALNGADIYagCCTLKIEYARP 101 house mouse
17532395     120 NKVLVVTVLNaqypiDADVIYQISNAQGkVLRVAVMHKptvVQALVEFESmEVAKAAKHAMNGADIYsgCCTLKVEFAKP 199 Caenorhabditis ...
CBY12627     699 GHVLLLTILDamypiTTKLLERICSYAGpVLRIVIFRKk-sVQAMIEFDSiVGAQRAKAALNGVDIYrgCCTIKVEYAKP 777 Oikopleura dioica
CAZ32696     120 NHILLFTIYDtdrpiTVETIYRITFSYGsVLRIVIFRKs-qVQAMVEFGSvQEARNAKLHLNGADIFpgCCTLKVDYARP 198 Schistosoma man...
XP_013379093 129 NKVLLITVLNpqypiTVDVLHTICSPNGqVLRIVIFKKn-gVQAMVEFDSiESAQRAKQALNGADIYsgCCTLKMEFAKP 207 Lingula anatina
RWS30754      59 NHVLLITVINpaypiTCDVIHQICSPQGkVMRVVIFKKn-gVQAMVEFDSvDSAKRAKQALHGCDIYsgCCTLRIEFAKP 137 Leptotrombidium...
ELU17197     127 NKVLLFTIFNpkypiTVDVMHTIASNNGpVARIVIFRKn-gLQCMVEFETlEGAQRAKSALNGADIYsgCCTLKIEYAKP 205 Capitella teleta
XP_019851800 147 NHILLFTIFNplypiTVDVIRTICTPYGfVQRIVIFRKn-gLQVLVEFDSnHSAQRAKQQLDGADIYagCCTLKIEFART 225 Amphimedon quee...
KXJ29151     246 SNILLFTIINplhpiNVKILHKICSISGkVLRIVIFHKn-gLQALVEFDTvESAQNALARLNGQDIYagCCTLKIDYSKK 324 Exaiptasia pallida
PIK47031     134 NCVLLITVLYpkypmDTQVIHKVADKDNnVLRIVMIRKn-gVQAMVEFDSvESATETKVRLNGRDVYsgCCTLKIEFARP 212 Japanese sea cu...
Feature 1          #####
2E5I_A       102 TRLNVIR 108 house mouse
17532395     200 DRVRVQR 206 Caenorhabditis elegans
CBY12627     778 QSLNVFK 784 Oikopleura dioica
CAZ32696     199 ARLSVPR 205 Schistosoma mansoni
XP_013379093 208 TTLNVYK 214 Lingula anatina
RWS30754     138 TRLNVYK 144 Leptotrombidium deliense
ELU17197     206 TRLNVSR 212 Capitella teleta
XP_019851800 226 NKLNVFK 232 Amphimedon queenslandica
KXJ29151     325 AKKLNVF 331 Exaiptasia pallida
PIK47031     213 KTLTVHK 219 Japanese sea cucumber

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