Conserved Protein Domain Family
RRM2_PTBPH1_PTBPH2

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cd12691: RRM2_PTBPH1_PTBPH2 
RNA recognition motif 2 (RRM2) found in plant polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2)
This subfamily corresponds to the RRM2 of PTBPH1 and PTBPH2. Although their biological roles remain unclear, PTBPH1 and PTBPH2 show significant sequence similarity to polypyrimidine tract binding protein (PTB) that is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. Both, PTBPH1 and PTBPH2, contain three RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain).
Statistics
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PSSM-Id: 241135
Aligned: 7 rows
Threshold Bit Score: 171.182
Created: 14-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative RNA
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on sequence similarity to Homo sapiens polypyrimidine tract binding protein.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            # #                            # # #    # #                                 
Q9FGL9       110 GNVLLVTIEGdda-rmVSIDVLHLVFSAFGFVHKITTFEKtAGYQALVQFTDaETATAAKLALDGRSIPRYLLaetVGQC 188 thale cress
Q9MAC5       109 GNVLLVTFEGves-heVSIDVIHLVFSAFGFVHKIATFEKaAGFQALVQFTDvETASAARSALDGRSIPRYLLsahVGSC 187 thale cress
XP_002976368 110 SNVLLVTIEGvea-gdVSIDVLHLVFSAFGFVHKIATFEKtAGFQALVQFSDaNTASAARQALDGRSIPRYLLpehVGSC 188 Selaginella moe...
ADE76380     110 SNVLLVTIEGvea-gdVSIDVLHLVFSAFGFVHKIATFEKsAGFQALVQFSDvDTASSARSALDGRSIPRYLLaehVGPC 188 Sitka spruce
EIE19256     107 GNVLLVSLENlapdmnVTLDTLHLVFSAFGLVQKIATFEKgQGFQALVQYADaETAEQVRLALDGRHIPKHLLndtPNPP 186 Coccomyxa sp. C...
PNR27394     110 SNVLLVTIEGvea-gdVSIDVLHLVFSAFGFVHKIATFEKsAGFQALVQFSDaNTASAAKSALEGRSIPRYLLpdhVGPC 188 Physcomitrella ...
XP_019577321 109 GNVLLVTFEGves-heVSIDVIHLVFSAFGFVHKIATFEKaAGFQALVQFTDvETASAARSALDGRSIPKYLLpeyVGSC 187 Chinese rufous ...
Feature 1          #  ##    #####
Q9FGL9       189 SLKITYSAHTDLTVKF 204 thale cress
Q9MAC5       188 SLRMSYSAHTDLNIKF 203 thale cress
XP_002976368 189 HLRISFSAHTDLNVKF 204 Selaginella moellendorffii
ADE76380     189 HLRISFSAHTDLNVKF 204 Sitka spruce
EIE19256     187 SLKITYSQHTDLNVKF 202 Coccomyxa sp. C-169
PNR27394     189 HLRISFSAHNDLNVKF 204 Physcomitrella patens
XP_019577321 188 NLRMSYSAHTDLNIKF 203 Chinese rufous horseshoe bat

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