Conserved Protein Domain Family
RRM1_hnRNPM

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cd12657: RRM1_hnRNPM 
RNA recognition motif 1 (RRM1) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
This subgroup corresponds to the RRM1 of hnRNP M, a pre-mRNA binding protein that may play an important role in the pre-mRNA processing. It also preferentially binds to poly(G) and poly(U) RNA homopolymers. Moreover, hnRNP M is able to interact with early spliceosomes, further influencing splicing patterns of specific pre-mRNAs. hnRNP M functions as the receptor of carcinoembryonic antigen (CEA) that contains the penta-peptide sequence PELPK signaling motif. In addition, hnRNP M and another splicing factor Nova-1 work together as dopamine D2 receptor (D2R) pre-mRNA-binding proteins. They regulate alternative splicing of D2R pre-mRNA in an antagonistic manner. hnRNP M contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an unusual hexapeptide-repeat region rich in methionine and arginine residues (MR repeat motif).
Statistics
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PSSM-Id: 410058
Aligned: 6 rows
Threshold Bit Score: 152.737
Created: 26-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P52272        72 RAFITNIPFdvKWQSLKDLVKekvGEVTYVELLmdaeGKSRGCAVVEFKmeESMKKAAEVLNkhsLSGRPLKVKED 147 human
AAI34826      69 RAFISNIPFdvKWQALKDLVKekvGEVTYVELLmddeGKSRGCAAVEFKleESMKKAVQVLNkhvFNGRPLKVRED 144 African clawed frog
NP_001026103  77 RAFITNIPFdvKWQSLKDLVKekvGEVTYVELLmdaeGKSRGCAVVEFKmeESMKKAAEVLNkhsLGGRPLKVKED 152 chicken
NP_001243560  49 SVFVSNIPYdvKWQTLKDLMKekvGEVTYVEHLmdgeGKSRGCAVVEFRteELMKKAVEKVNkhvMNGRPLKVKED 124 zebrafish
XP_014340440  48 RVLITNVPFdvKWQALKDLAKekvGEVTYVELLmdaeGKSRGCATVEFRteESMKKAADVLNrydMNGRPLKVKID 123 coelacanth
XP_007906496  35 RVFVSNIPFemKWQTLKDLMRekvGEVTYVELFmdadENSRGCGIVEFKseEYMKKAVEVMDnysFNGRPLKVKER 110 elephant shark
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