1FXL,1FNX,4ED5


Conserved Protein Domain Family
RRM2_Hu

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cd12652: RRM2_Hu 
Click on image for an interactive view with Cn3D
RNA recognition motif 2 (RRM2) found in the Hu proteins family
This subfamily corresponds to the RRM2 of Hu proteins family which represents a group of RNA-binding proteins involved in diverse biological processes. Since the Hu proteins share high homology with the Drosophila embryonic lethal abnormal vision (ELAV) protein, the Hu family is sometimes referred to as the ELAV family. Drosophila ELAV is exclusively expressed in neurons and is required for the correct differentiation and survival of neurons in flies. The neuronal members of the Hu family include Hu-antigen B (HuB or ELAV-2 or Hel-N1), Hu-antigen C (HuC or ELAV-3 or PLE21), and Hu-antigen D (HuD or ELAV-4), which play important roles in neuronal differentiation, plasticity and memory. HuB is also expressed in gonads. Hu-antigen R (HuR or ELAV-1 or HuA) is the ubiquitously expressed Hu family member. It has a variety of biological functions mostly related to the regulation of cellular response to DNA damage and other types of stress. Moreover, HuR has an anti-apoptotic function during early cell stress response. It binds to mRNAs and enhances the expression of several anti-apoptotic proteins, such as p21waf1, p53, and prothymosin alpha. HuR also has pro-apoptotic function by promoting apoptosis when cell death is unavoidable. Furthermore, HuR may be important in muscle differentiation, adipogenesis, suppression of inflammatory response and modulation of gene expression in response to chronic ethanol exposure and amino acid starvation. Hu proteins perform their cytoplasmic and nuclear molecular functions by coordinately regulating functionally related mRNAs. In the cytoplasm, Hu proteins recognize and bind to AU-rich RNA elements (AREs) in the 3' untranslated regions (UTRs) of certain target mRNAs, such as GAP-43, vascular epithelial growth factor (VEGF), the glucose transporter GLUT1, eotaxin and c-fos, and stabilize those ARE-containing mRNAs. They also bind and regulate the translation of some target mRNAs, such as neurofilament M, GLUT1, and p27. In the nucleus, Hu proteins function as regulators of polyadenylation and alternative splicing. Each Hu protein contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 may cooperate in binding to an ARE. RRM3 may help to maintain the stability of the RNA-protein complex, and might also bind to poly(A) tails or be involved in protein-protein interactions.
Statistics
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PSSM-Id: 410055
Aligned: 16 rows
Threshold Bit Score: 141.307
Created: 1-Feb-2012
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Structure:1FXL_A; Homo sapiens HuD protein in complex with AU-rich element, contacts at 4A.
  • Structure:1FNX; Mouse HuC protein binds RNA, contacts at 4A.
  • Structure:4ED5; Homo sapiens HuR protein binds RNA, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         # #                       ## # #         #   # #                               
1FXL_A        89 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQvt-gvSRGVGFIRFDKRIEAEEAIKGLngqkp------sgatEP 161 human
P16914       248 ANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAgndtqTKGVGFIRFDKREEATRAIIALngttp------ssctDP 321 fruit fly
NP_496057    128 SNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNvt-glSKGVGFVRFDKKDEADVAIKTLngsip------sgcsEQ 200 nematode
EFX86374      76 ANLYVSGIPKTMCQSELETLFAPFGRIITSRILCDSitaglSKGVGFIRFDTRGEAERAIEKLngtvp------qgatEP 149 common water flea
XP_002406562  48 ANLYVSGLPKSMTQQDLEGLFSPYGRIITSRILCDNit-glSKGVGFVRFDQRVEAERAIKHLhnsvpa----dggatEP 122 black-legged tick
CCD79782      76 ANLYISGLPKTMKQNELEQLFSQYGRIITARILYDNkt-giSRGVAFIRFNHRYEAELAIQQLngyqlpfeysndilnRP 154 Schistosoma man...
ABO93208     136 ANLYLSGLPKSMSEPELRSLFSSCGSIINCRILCDNtt-glSKGVGFIRFDQRVEAERAIKQLngkvp------egatEP 208 Dumeril's clam ...
EEN61974     113 ANLYVSGLPKTMTQQDLEGLFEAHGRIITSRILFDPvt-gqSRGVGFVRFDQRVEAERAITELnghip------kgatDP 185 Florida lancelet
ACO88935     122 ANLYISGLPKSFTQLDLEKLFSQCGFIITSRILYDNnt-glSKGVGFIRFDQRIEAERAIQKLhgtip------egatEP 194 Octopus bimacul...
XP_002115065  94 ANLYVSGLPLHYTHQDLDNLFGQYGAIITSKVLYDGng--vSRGVGFVRYDKRNEAEAAILALnktlp------ngfqAQ 165 Trichoplax adha...
Feature 1           # #
1FXL_A       162 ITVKFA 167 human
P16914       322 IVVKFS 327 fruit fly
NP_496057    201 ITVKFA 206 nematode
EFX86374     150 ITVKFA 155 common water flea
XP_002406562 123 ITVKFA 128 black-legged tick
CCD79782     155 ITVKFA 160 Schistosoma mansoni
ABO93208     209 ITVKFA 214 Dumeril's clam worm
EEN61974     186 ITVKFA 191 Florida lancelet
ACO88935     195 ITVKFA 200 Octopus bimaculoides
XP_002115065 166 LTVKFA 171 Trichoplax adhaerens

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