Conserved Protein Domain Family
RRM2_FCA

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cd12637: RRM2_FCA 
RNA recognition motif 2 (RRM2) found in plant flowering time control protein FCA and similar proteins
This subgroup corresponds to the RRM2 of FCA, a gene controlling flowering time in Arabidopsis, which encodes a flowering time control protein that functions in the posttranscriptional regulation of transcripts involved in the flowering process. The flowering time control protein FCA contains two RNA recognition motifs (RRMs), also known as RBDs (RNA binding domains) or RNP (ribonucleoprotein domains), and a WW protein interaction domain.
Statistics
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PSSM-Id: 410045
Aligned: 7 rows
Threshold Bit Score: 130.578
Created: 19-Dec-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative RNA
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on sequence similarity human CUG-binding protein 1.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        # # ##  #                  # # #         ### #                             # #  
O04425       212 KLFVGSLNKqaTEKEVEEIFLQFGHVEDVYLMRdey--rqSRGCGFVKYSsKETAMAAIDGLNGtytMRGCNQPLIVRFA 289  thale cress
CAJ20709     138 KLFIGSIPRtmTEEEVRQFFSTYGTVEEVFVMKdnv-qntGKGCCFVKFAfKEEALHAVRTLSGkhtFEGCTRPVEVRFA 216  Toxoplasma gon...
EED95475     100 KLFVGQLPReaDEDFVRELFTSYGDITGIYIIKkrn-neaKNGCAFVKFReRDMAQAAIDALDGevhLEGVDKPIRVKFA 178  Thalassiosira ...
OXB70751      90 KLFIGSIPKtmLDEEVRQFFCAYGNVEEVFVMKdpv-tqaGKGCCFVKFAyKEEALHAIRSLSGkhtFDGCSRPVEVRFA 168  northern bobwhite
XP_023973584 136 KLFIGSIPKtmLDEEVRQFFCAYGTVEEVFVMKdpv-tqvGKGCCFVKFAyKEEALHAIRSLSGkhtFDGCSRPVEVRFA 214  sperm whale
EGR29040      44 KLFVGSLPKtcTEQNIRDIFETFGEIEELHLMKds---qnNTRQAFLKYKlKEKAHLAIRNLNSqvyIGNSENPIEVRFA 120  Ichthyophthiri...
EER00871      10 RLFVGKLPAawNEQNIRDLFEAYGEVQEVGLIRpkengkqQTGCAFVKFGaVHEAATAIKSLNGtykADDASGFVQVQFA 89   Perkinsus mari...
Feature 1          
O04425       290 EP 291  thale cress
CAJ20709     217 ES 218  Toxoplasma gondii RH
EED95475     179 DQ 180  Thalassiosira pseudonana CCMP1335
OXB70751     169 ES 170  northern bobwhite
XP_023973584 215 ES 216  sperm whale
EGR29040     121 KK 122  Ichthyophthirius multifiliis
EER00871      90 NG 91   Perkinsus marinus ATCC 50983

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