2CQI


Conserved Protein Domain Family
RRM1_TIAR

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cd12616: RRM1_TIAR 
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RNA recognition motif 1 (RRM1) found in nucleolysin TIAR and similar proteins
This subgroup corresponds to the RRM1 of nucleolysin TIAR, also termed TIA-1-related protein, and a cytotoxic granule-associated RNA-binding protein that shows high sequence similarity with 40-kDa isoform of T-cell-restricted intracellular antigen-1 (p40-TIA-1). TIAR is mainly localized in the nucleus of hematopoietic and nonhematopoietic cells. It is translocated from the nucleus to the cytoplasm in response to exogenous triggers of apoptosis. TIAR possesses nucleolytic activity against cytolytic lymphocyte (CTL) target cells. It can trigger DNA fragmentation in permeabilized thymocytes, and thus may function as an effector responsible for inducing apoptosis. TIAR is composed of three N-terminal highly homologous RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a glutamine-rich C-terminal auxiliary domain containing a lysosome-targeting motif. It interacts with RNAs containing short stretches of uridylates and its RRM2 can mediate the specific binding to uridylate-rich RNAs.
Statistics
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PSSM-Id: 410028
Aligned: 6 rows
Threshold Bit Score: 157.558
Created: 21-Sep-2011
Updated: 17-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2CQI_A        17 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEht-----------------sNDPYCFVEFYEHRDAAAALAAMNGRK 79  human
NP_957426      9 TLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEht-----------------sNDPYCFVEFFEHRDAAAALAAMNGRK 71  zebrafish
AAH45086      47 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEqtdgrrvgasvsfpvmpnanNDPYCFVEFYEHRDAAAALAAMNGRK 126 African clawed ...
XP_007903834   9 TLYVGNLSRDVTEALILQLFSQIGPCKSCKMITEhs-----------------sNDPYCFVEFYEHRDAAAALAAMNGRK 71  elephant shark
AAO49721       9 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEqpdssrrvnsvgfsvlqhtsNDPYCFVEFYEHRDAAAALAAMNGRK 88  chicken
XP_005999272  11 TLYVGNLSRDVTEVLILQVFSQIGPCKSCKMITEqtdgrrvnssvgfsalqhtsNDPYCFVEFYEHRDAAAALAAMNGRK 90  coelacanth
2CQI_A        80 ILGKEVKVNWATTPSSQK 97  human
NP_957426     72 ILGKEVKVNWATTPSSQK 89  zebrafish
AAH45086     127 ILGKEVKVNWATTPSSQK 144 African clawed frog
XP_007903834  72 IMGKEVKVNWATTPSSQK 89  elephant shark
AAO49721      89 ILGKEVKVNWATTPSSQK 106 chicken
XP_005999272  91 ILGKEVKVNWATTPSSQK 108 coelacanth
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