Conserved Protein Domain Family
RRM2_NGR1_NAM8_like

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cd12613: RRM2_NGR1_NAM8_like 
RNA recognition motif 2 (RRM2) found in yeast negative growth regulatory protein NGR1, yeast protein NAM8 and similar proteins
This subgroup corresponds to the RRM2 of NGR1 and NAM8. NGR1, also termed RNA-binding protein RBP1, is a putative glucose-repressible protein that binds both, RNA and single-stranded DNA (ssDNA), in yeast. It may function in regulating cell growth in early log phase, possibly through its participation in RNA metabolism. NGR1 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a glutamine-rich stretch that may be involved in transcriptional activity. In addition, NGR1 has an asparagine-rich region near the carboxyl terminus which also harbors a methionine-rich region. The family also includes protein NAM8, which is a putative RNA-binding protein that acts as a suppressor of mitochondrial splicing deficiencies when overexpressed in yeast. It may be a non-essential component of the mitochondrial splicing machinery. Like NGR1, NAM8 contains two RRMs.
Statistics
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PSSM-Id: 410025
Aligned: 5 rows
Threshold Bit Score: 159.6
Created: 2-Mar-2012
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P32831   191 EFSLFVGDLSPTATEADLLSLFqt---------------rFKSVKTVRVMTDplTGSSRCFGFVRFGDEdERRRALIEMS 255  Saccharomyces cere...
EGO27972 295 EYSIFVGDLAPETSNSDLVAVFrnpvlglrndrepkfirpFLSCKSAKIMLDpvTGVSRGYGFVRFTEEaDQQRALIEMH 374  Serpula lacrymans ...
O60176   185 EYSIFVGDLSPNVNEFDVYSLFas---------------rYNSCKSAKIMTDpqTNVSRGYGFVRFTDEnDQKSALAEMQ 249  fission yeast
O13759   181 EFSIFVGDLLPTTEDSDLFMTFrs---------------iYPSCTSAKIIVDpvTGLSRKYGFVRFSSEkEQQHALMHMQ 245  Schizosaccharomyce...
BAK04269 140 EYSIFVGDLGPEVNEYVLVSLFqa---------------rFPSCKSAKIMTDamSGQSRGYGFVRFSDEnDQQRALVEMQ 204  domesticated barley
P32831   256 GkwFQGRALRVAYAT 270  Saccharomyces cerevisiae S288c
EGO27972 375 GlyCLSRPMRISPAT 389  Serpula lacrymans var. lacrymans S7.9
O60176   250 GqiCGDRPIRVGLAT 264  fission yeast
O13759   246 GylCQGRPLRISVAS 260  Schizosaccharomyces pombe 972h-
BAK04269 205 GvyCGNRPMRISTAT 219  domesticated barley
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