Conserved Protein Domain Family
RRM1_NGR1_NAM8_like

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cd12611: RRM1_NGR1_NAM8_like 
RNA recognition motif 1 (RRM1) found in yeast negative growth regulatory protein NGR1, yeast protein NAM8 and similar proteins
This subgroup corresponds to the RRM1 of NGR1 and NAM8. NGR1, also termed RNA-binding protein RBP1, is a putative glucose-repressible protein that binds both, RNA and single-stranded DNA (ssDNA), in yeast. It may function in regulating cell growth in early log phase, possibly through its participation in RNA metabolism. NGR1 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two of which are followed by a glutamine-rich stretch that may be involved in transcriptional activity. In addition, NGR1 has an asparagine-rich region near the carboxyl terminus which also harbors a methionine-rich region. The subgroup also includes NAM8, a putative RNA-binding protein that acts as a suppressor of mitochondrial splicing deficiencies when overexpressed in yeast. It may be a non-essential component of the mitochondrial splicing machinery. Like NGR1, NAM8 contains two RRMs.
Statistics
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PSSM-Id: 410023
Aligned: 8 rows
Threshold Bit Score: 106.022
Created: 2-Mar-2012
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P32831     35 TLWMGDLDPSFDEATIEEIWSkld----------kkvIVKLIRAKKNLlipcsstsssnnntseenaenqqsasnstdql 104  Saccharomyces cer...
3121946    86 TLWMGDLEPWMDATFIQQLWAsln----------epvNVKVMRSKASSset----------------------------- 126  fission yeast
O60176     94 TLWMGELEPWVTEAFIQQVWNtlg----------kavKVKLIRNRYTGmn------------------------------ 133  Schizosaccharomyc...
NP_984403  53 QLYMGDLDPSWTEGDIKQIWAtlge---------anvQVKLIKNSSGGgn------------------------------ 93   Ashbya gossypii A...
GAA97232  100 ALWMGDLEEWMDENYIRRCISamqldrdengqlglpvMIKMQRSRSGA-------------------------------- 147  Mixia osmundae IA...
EGO27972  176 TLWWGDLEPWMDEEYAKQVCGlmgw---------dpvNIKVPSPGPDPasgqq--------------------------- 219  Serpula lacrymans...
Q00539     55 QLYMGDLDPTWDKNTVRQIWAslg-----------eaNINVRMMWNNTlnngsrss------------------------ 99   Saccharomyces cer...
BAK04269   49 TLWMGELEPWMDENFIKGVFLsatt---------etvNVKVIRDKNSGn------------------------------- 88   domesticated barley
P32831    105 dnsqminingisfidpsttqlhhaGYCFVEFETqkDAKFALSl----NATPLPNfyspttnsqtnptfkrTFRLNWASGA 180  Saccharomyces cer...
3121946   127 ----------------------liSYCFVQFSSsaAAERALMk---yNNTMIPGah-------------cTFKLNWATGG 168  fission yeast
O60176    134 -----------------------aGYCFVEFASphEASSAMSm----NNKPIPGtn-------------hLFKLNWASGG 173  Schizosaccharomyc...
NP_984403  94 -----------------------sGYCFVEFPSnlAATNALLk----TGLPIPVda------------srTLKLNWASFA 134  Ashbya gossypii A...
GAA97232  148 ------------------------DYCLLSFPAphHAQNALSlfasrPPTFMPGse-------------rTFKLTWAHRS 190  Mixia osmundae IA...
EGO27972  220 --------------------annpGYCFLTFPSpsLAQSVLAqv-anNGSGQPVtmpn---------sskPFVLNWASSV 269  Serpula lacrymans...
Q00539    100 -----------------mgpknnqGYCFVDFPSstHAANALLk----NGMLIPNfp------------nkKLKLNWATSS 146  Saccharomyces cer...
BAK04269   89 -----------------------aGYCFVEFQTpeAATKALAl----NGSGVPNss-------------rHFKLNWASGG 128  domesticated barley
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