Conserved Protein Domain Family
RRM1_SF2_plant_like

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cd12599: RRM1_SF2_plant_like 
RNA recognition motif 1 (RRM1) found in plant pre-mRNA-splicing factor SF2 and similar proteins
This subgroup corresponds to the RRM1 of SF2, also termed SR1 protein, a plant serine/arginine (SR)-rich phosphoprotein similar to the mammalian splicing factor SF2/ASF. It promotes splice site switching in mammalian nuclear extracts. SF2 contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a C-terminal domain rich in proline, serine and lysine residues (PSK domain), a composition reminiscent of histones. This PSK domain harbors a putative phosphorylation site for the mitotic kinase cyclin/p34cdc2.
Statistics
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PSSM-Id: 410011
Aligned: 6 rows
Threshold Bit Score: 133.334
Created: 23-Dec-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3929368        8 TVYVGNLPgDIREREVEDLFSKYGPVVQIDLKVpprppGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVEL 79  thale cress
EFN52065      11 LVYVGNLPdDIREREVEDLFSKYGKVVSIDMKApvrppAFAFVEFADPRDAEDAVRGRDGYDFYGNRLRVEL 82  Chlorella variabilis
XP_001690007   5 RVFVGNLPmDVREREVEDLFFKYGRIRSVDLKIgprppAFAFVEFEDERDAADAVRGRDGIEFQGQRLRVEV 76  Chlamydomonas reinhardtii
CCA25022       4 RIYVGNLPmSIRTREVEDLFYKHGKIQDIDLKLplrppAYAFIDFEDARDAEDAIEARDGYKYEGQRLRVER 75  Albugo laibachii Nc14
ADE76115       8 ILYVGNLPvDFRERDIEDIFHKYGPVVKIDLKFpprppGYCFIEFENARDAEDAIRGRDGYDIDGHRLRVEL 79  Sitka spruce
XP_019577825   8 TIYVGNLPgDIREREVEDLFSKYGPVVQIDLKIpprppGYAFVEFEDARDAEDAIHGRDGYDFDGHCLRVEL 79  Chinese rufous horsesho...
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