3SDE,5IFN


Conserved Protein Domain Family
RRM1_PSP1

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cd12586: RRM1_PSP1 
Click on image for an interactive view with Cn3D
RNA recognition motif 1 (RRM1) found in vertebrate paraspeckle protein 1 (PSP1)
This subgroup corresponds to the RRM1 of PSPC1, also termed paraspeckle component 1 (PSPC1), a novel nucleolar factor that accumulates within a new nucleoplasmic compartment, termed paraspeckles, and diffusely distributes in the nucleoplasm. It is ubiquitously expressed and highly conserved in vertebrates. Its cellular function remains unknown currently, however, PSPC1 forms a novel heterodimer with the nuclear protein p54nrb, also known as non-POU domain-containing octamer-binding protein (NonO), which localizes to paraspeckles in an RNA-dependent manner. PSPC1 contains two conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), at the N-terminus.
Statistics
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PSSM-Id: 409999
Aligned: 7 rows
Threshold Bit Score: 139.67
Created: 21-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimer
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #                                              #  ##  ## #             
3SDE_A        22 RCRLFVGNLPtDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLEsRTLAEIAKAELDGTILKSRPLRIRF 92  human
Q1JPY8        75 RCRLFVGNLPsDMADEDFKKLFFKYGDAKEVFINRDRGFGFIRLEtRTLAEIAKAELDGTVLGNRPIRIRF 145 zebrafish
Q5ZK88        80 RCRLFVGNLPtDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLEsRTLAEIAKAELDGTILKSRPLRIRF 150 chicken
5IFN_A        21 RCRLFVGNLPtDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLEsRTLAEIAKAELDGTILKSRPLRIRF 91  human
XP_006006745  82 RCRLFVGNLPtDITEPDFKKLFDKYGEPSEVFINKDRGFGFIRLEtRTLAEIAKAELDGTILKNRPLRIRF 152 coelacanth
XP_007903782  62 RCRLFVGNLPtDITEQDFKKLFEKYGDPSEIFINRDRGFGFIRLEtRTLAEIAKAELDGTMMRNRPLRIRF 132 elephant shark
NP_001026002  80 RCRLFVGNLPtDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLEsRTLAEIAKAELDGTILKSRPLRIRF 150 chicken

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