Conserved Protein Domain Family
RRM2_hnRNPAB

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cd12584: RRM2_hnRNPAB 
RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B) and similar proteins
This subgroup corresponds to the RRM2 of hnRNP A/B, also termed APOBEC1-binding protein 1 (ABBP-1), an RNA unwinding protein with a high affinity for G- followed by U-rich regions. hnRNP A/B has also been identified as an APOBEC1-binding protein that interacts with apolipoprotein B (apoB) mRNA transcripts around the editing site and thus plays an important role in apoB mRNA editing. hnRNP A/B contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long C-terminal glycine-rich domain that contains a potential ATP/GTP binding loop.
Statistics
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PSSM-Id: 409997
Aligned: 5 rows
Threshold Bit Score: 159.341
Created: 19-Sep-2011
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putative DNA
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # # ##                        #### ##  ### # #                #      ### ##
Q99729       149 KDPVKKIFVGGLNPEspTEEKIREYFGEFGEIEAIELPMDPKlNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKV 228 human
S56750       170 KDPVKKIFVGGLNPEa-TEEKIREYFGEFGEIEAIELPMDPKtNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKV 248 chicken
NP_001080489 144 KDPIKKIFVGGLNPEa-GEDQIREYFETFGEIEAIELPMDPKtNKRRGFVFITFKEEDPVKKILEKKFHNVSGSKCEIKI 222 African clawed ...
AAH48898     149 KEPVKKIFVGGLNPEt-TEERIREYFGAFGEIETIELPMDPKsNKRRGFVFITFKEEEAVKKILEKKYHNVSGTKDTSGK 227 zebrafish
XP_005989394 136 KDPVKKIFIGGLNPEt-SEDTIREYFGGFGEIESIELPMDPKtNKRRGFVFITFKEEDPVKKILEKKFHNVSGSKCEIKI 214 coelacanth
Feature 1        #
Q99729       229 A 229 human
S56750       249 A 249 chicken
NP_001080489 223 A 223 African clawed frog
AAH48898     228 E 228 zebrafish
XP_005989394 215 A 215 coelacanth

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