1WTB,1IQT


Conserved Protein Domain Family
RRM2_hnRNPD

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cd12583: RRM2_hnRNPD 
Click on image for an interactive view with Cn3D
RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
This subgroup corresponds to the RRM2 of hnRNP D0, also termed AU-rich element RNA-binding protein 1, a UUAG-specific nuclear RNA binding protein that may be involved in pre-mRNA splicing and telomere elongation. hnRNP D0 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), in the middle and an RGG box rich in glycine and arginine residues in the C-terminal part. Each of RRMs can bind solely to the UUAG sequence specifically.
Statistics
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PSSM-Id: 241027
Aligned: 7 rows
Threshold Bit Score: 145.92
Created: 19-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA binding
Conserved site includes 22 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        # # ##                       #### ##  ### # #                #      ### ###
1WTB_A         3 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKkYHNVGLSKCEIKVA 77  human
NP_001026314  85 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKkYHNVGLSKCEIKVA 159 chicken
AAH97855     115 KIFVGGLSPDTPEDKIREYFGTFGEVEAIELPMDNKTNKRRGFCFITFKEEDPVKNIMEKkYHNVGLSKCEIKVA 189 African clawed frog
NP_001103930 140 KIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIMEKmYHNIGLSKCEVKVA 214 zebrafish
XP_007887160 160 KIFVGGLSPDTAEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKILEKkFHNVGLSKCEIKVA 234 elephant shark
1IQT_A         1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKkYHNVGLSKCEIKVA 75  human
XP_006010156 137 KIFVGGLSPDTPEEKIREYFGGFGEVEFIELPMDSKTNKRRGFCFITFKEEEPVKKIMEKkYHNVGLSKCEIKVA 211 coelacanth

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