Conserved Protein Domain Family
RRM_Set1B

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cd12549: RRM_Set1B 
RNA recognition motif in vertebrate histone-lysine N-methyltransferase Setd1B (Set1B)
This subgroup corresponds to the RRM of Setd1B, also termed SET domain-containing protein 1B (Set1B), or lysine N-methyltransferase 2G, a ubiquitously expressed vertebrates histone methyltransferase that exhibits high homology to yeast Set1. Set1B is localized to euchromatic nuclear speckles and associates with a complex containing six human homologs of the yeast Set1/COMPASS complex, including CXXC finger protein 1 (CFP1; homologous to yeast Spp1), Rbbp5 (homologous to yeast Swd1), Ash2 (homologous to yeast Bre2), Wdr5 (homologous to yeast Swd3), and Wdr82 (homologous to yeast Swd2). Set1B complex is a histone methyltransferase that produces trimethylated histone H3 at Lys4. Set1B contains an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), an N- SET domain, and a C-terminal catalytic SET domain followed by a post-SET domain.
Statistics
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PSSM-Id: 409965
Aligned: 6 rows
Threshold Bit Score: 193.245
Created: 16-Sep-2011
Updated: 17-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9UPS6        101 PPKQVTFAKLNDNIRENFLRDMCKKYGEVEEVEILYNPKTKKHLGIAKVVFATVRGAKDAVQHLHSTSVMGNIIHVELDt 180  human
Q66J90        119 PPKQVTFAKLNDNIRENFLGDMCKKYGEVEEVEILYNPKNKKHLGIAKVIFATVKGAKDAVKHLHNTSVMGNIIHAELDt 198  African clawe...
Q5F3P8        119 PPKQVTFAKLNDNIRENFLTDMCKKYGEVEEVEILYNPKNKKHLGIAKVIFATVKGAREAVQHLHNTSVMGNIIHVELDt 198  chicken
Q1LY77        136 PPKEVTFAKLNDNVREGFLTDMCKKFGDIEEVEILYNPKNKKHLGIAKVVFETVKAAKDAVQNLHNTSVMGNIIHVELDp 215  zebrafish
XP_005989037  119 PPKQVTFAKLNDNIRENFLAEMCKKYGEVEEVEILYNPKNKKHLGIAKVIFATVKGAKDAVQNLHNTSVMGNIIHVELDt 198  coelacanth
XP_007900538   35 PPKQVTFAKLNDNVREEFLRDMCKKYGEVEEVKILYNPKNKKHLGIAKVVFATVKGAKETVQHLHSTSVMGNIIHVVLDt 114  elephant shark
Q9UPS6        181 KGETRMRFYELLV 193  human
Q66J90        199 KGETRMRFYELLV 211  African clawed frog
Q5F3P8        199 KGETRMRFYELLV 211  chicken
Q1LY77        216 KGENRQRYFQRLI 228  zebrafish
XP_005989037  199 KGDTRMRFYDLLV 211  coelacanth
XP_007900538  115 KGAXISAKLQQQF 127  elephant shark
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