1OWX


Conserved Protein Domain Family
RRM2_La

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cd12541: RRM2_La 
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RNA recognition motif 2 in La autoantigen (La or LARP3) and similar proteins
This subgroup corresponds to the RRM2 of La autoantigen, also termed Lupus La protein, or La ribonucleoprotein, or Sjoegren syndrome type B antigen (SS-B), a highly abundant nuclear phosphoprotein and well conserved in eukaryotes. It specifically binds the 3'-terminal UUU-OH motif of nascent RNA polymerase III transcripts and protects them from exonucleolytic degradation by 3' exonucleases. In addition, La can directly facilitate the translation and/or metabolism of many UUU-3' OH-lacking cellular and viral mRNAs, through binding internal RNA sequences within the untranslated regions of target mRNAs. La contains an N-terminal La motif (LAM), followed by two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). In addition, it possesses a short basic motif (SBM) and a nuclear localization signal (NLS) at the C-terminus.
Statistics
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PSSM-Id: 409957
Aligned: 17 rows
Threshold Bit Score: 74.2266
Created: 10-Feb-2012
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1OWX_A        18 GCLLKFSGDldd-qtCREDLHILFSnh-----geIKWIDFVRGaKEGIILFKE--KAKEALGKAKDAnng--nlqLRNKE 87  human
XP_001637883 240 GAVLHFTDVge--qtSREDLKELFGeh-----edIAWVNFSRGdTEGHIRFLKegGAQRAMDALKKDdk----ilIRNKQ 308 starlet sea ane...
XP_002110860 207 GCIMYFKDVge--qtSREDLKEIFGef-----esISFVDFSRNdTEGYIRFTEgdGATRAIEKVKEKndg--kivIRDVE 277 Trichoplax adha...
XP_003388333 243 GAILHFTGCgd--gtTRETLKEYFRqf-----atVAWVDFQKGdTEGYIRFDEdgGAKKAYDGAMANvptgevckICDSD 315 Amphimedon quee...
EGD77348     216 DCVVHLAGVpd--dtSREDLKDVFEef-----geVAWVDFARGeTQGYVRYKTsgSAAAAVKAVQERet-----eINGSK 283 Salpingoeca sp....
EGB05535     219 GCVLKFEGLdavpeaSREMLRSACEvgd----ikVAYVEFERGqAEGFVRLAEp-KAAELVAKIAADgk----atLGGVD 289 Aureococcus ano...
XP_002423610 230 GTILHLEGDcs--qlTRENIKDKFNnlg----yeVAFVEYNKGeKEAHVRFSKenAGKDFIEKEGKEi------nIENSK 297 human body louse
Q26457       253 GASVHLSGFnk--dtSRETIKETILklde--sleVAFIDYAKTdTEGTVRFAAddAGKKFMEKLTDSki-----qIDEEE 323 Asian tiger mos...
EEC19567     105 GCLLRLGDLge--gtSWESIKQALApy-----aeVAFVDYARGrTEAVVRFAEegSAQAVLGQLGALeep---ltIDGTR 174 black-legged tick
ACO12304     228 GSVLIMDCLne--ktSREDLKEALKenfgvntedIAFIYYERGqKTAKLRFKNenGAKDVHEKIVASdek--efkVQDDK 303 salmon louse
1OWX_A        88 VTWEVLE 94  human
XP_001637883 309 AIVRVLE 315 starlet sea anemone
XP_002110860 278 STVKVLA 284 Trichoplax adhaerens
XP_003388333 316 VTLKVLE 322 Amphimedon queenslandica
EGD77348     284 PEVRMLQ 290 Salpingoeca sp. ATCC50818
EGB05535     290 AAVAVLE 296 Aureococcus anophagefferens
XP_002423610 298 VQARLLE 304 human body louse
Q26457       324 ITARLLE 330 Asian tiger mosquito
EEC19567     175 VTTSVLE 181 black-legged tick
ACO12304     304 VEFKLLE 310 salmon louse
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