Conserved Protein Domain Family
RRM1_RBM12_like

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cd12510: RRM1_RBM12_like 
RNA recognition motif 1 (RRM1) found in RNA-binding protein RBM12, RBM12B and similar proteins
This subfamily corresponds to the RRM1 of RBM12 and RBM12B. RBM12, also termed SH3/WW domain anchor protein in the nucleus (SWAN), is ubiquitously expressed. It contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two proline-rich regions, and several putative transmembrane domains. RBM12B show high sequence semilarity with RBM12. It contains five distinct RRMs as well. The biological roles of both RBM12 and RBM12B remain unclear.
Statistics
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PSSM-Id: 409932
Aligned: 14 rows
Threshold Bit Score: 120.845
Created: 5-Dec-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9NTZ6          2 AVVIRLQGLPivAGTMDIRHFFSGLtIPDGGVHIVGGElGEAFIVFATDEDARLGMMRtggtIKGSKVTLLLSS 75   human
XP_002593942    2 AVVIRLQGLPwsASAMDIRSFFSGLtIPDGGVHIVGGDaGDAFIIFASDEDARQAMARtgntIHGSPITLYLSS 75   Florida lancelet
XP_002434406    2 SIIIRMQNLPwaANSLDIRRYFQGLgIPEGGVHIVGGDkGDAFIAFSTDEDARQAMERdagkIKEVRIKLLLSS 75   black-legged tick
NP_001027771    4 GVVIRLKHLPlaAGTFDIRQFFSGLrIPDGGVHIIGGTdGTAFILFSTDEDARQAMMRdgqhVRATAIKLMLSS 77   Ciona intestinalis
EFX74295        2 SVIIRLQNLPwsANAADIRQFFHGLsIPEGGVHIVGGQlGDAFIAFSTDEDARQGMASdggmLKDSRVKLYLSS 75   common water flea
AAM11427        2 SVIIRLQNLPwtANARDIRNFFSGLsIPEGGVHIIGGEmGDAFIAFSTDEDARCAMLKdrekLMEIQVRLLLSS 75   fruit fly
XP_002736145    2 TIIIRLQGLPwaASALDVRHFFKGLtIPDGGVHIVGGEsGDAFIAFGGDEEARKAMLItnqpLCGSKITLMLSS 75   Saccoglossus kowale...
NP_492671       2 SVIIRLKNLPmtAGASDVRTFFTGLkIPDGAVHIIGGDeGEVFVGFSSDDDARLAMTKdrlmIHGAEVRLFLSS 75   nematode
NP_001071207    3 VVVLRLQGLNteAGSEDIRRFFHGLhIPEGGVHIIGGEmGEAFIIFKTEREGQLAMRYsgktIKGSSVSLHISS 76   zebrafish
CCD60169        2 SVIIRLQNLPisANASNIRRFFSGLsIPEGGVHIVGGTeGDAFIAFATDEDARKAMLLdrqtINGASVRLFLSS 75   Schistosoma mansoni
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