2CPD


Conserved Protein Domain Family
RRM3_ACF

?
cd12498: RRM3_ACF 
Click on image for an interactive view with Cn3D
RNA recognition motif 3 (RRM3) found in vertebrate APOBEC-1 complementation factor (ACF)
This subgroup corresponds to the RRM3 of ACF, also termed APOBEC-1-stimulating protein, an RNA-binding subunit of a core complex that interacts with apoB mRNA to facilitate C to U RNA editing. It may also act as an apoB mRNA recognition factor and chaperone and play a key role in cell growth and differentiation. ACF shuttles between the cytoplasm and nucleus. ACF contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), which display high affinity for an 11 nucleotide AU-rich mooring sequence 3' of the edited cytidine in apoB mRNA. All three RRMs may be required for complementation of editing activity in living cells. RRM2/3 are implicated in ACF interaction with APOBEC-1.
Statistics
?
PSSM-Id: 409921
Aligned: 6 rows
Threshold Bit Score: 154.694
Created: 21-Sep-2011
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
2CPD_A         8 DEDTMSSVKILYVRNLMlstSEEMIEKEFNNikpgAVERVKKIRDYAFVHFSnREDAVEAMKALNGKVLDGSPIEVTLAK 87  human
NP_001086049 223 DEDTMSSVKILYVRNLMlttAEETIEKEFSSvkpgSVERVKKIRDYAFVHFRnRADAVDAMNVLNGKIIDGSPIEVTLAK 302 African clawed ...
XP_421561    223 DEDTMSSVKILYVRNLMlstTEETIEKEFNNikqgAVERVKKIRDYAFVHFNkREDAVHAMKALNGKVLDGSPIEVTLAK 302 chicken
XP_014349735 137 DEDTMSTVKILYVRNLMlstTEETIEKEFSSikpgAVERVKKIRDYAFVHFTtREDAINAMNVLNGKVIDGSPIEVTLAK 216 coelacanth
XP_007895148 223 DEETMSSVKILYVRNLMlttTEETIEKEFSNikpgTVERVKKIRDYAFVHFItREDAINTMNAMNGKVLDGSPIEVTLAK 302 elephant shark
Q08BH5       212 DEETMQRVRVLYVRNLMlstTEETLRSEFSQlkpgSVERVKKLTDYAFIHFYnREDALTALESMNGKVIDGSPIEVTLAK 291 zebrafish
2CPD_A        88 PVD 90  human
NP_001086049 303 PVD 305 African clawed frog
XP_421561    303 PVD 305 chicken
XP_014349735 217 PVD 219 coelacanth
XP_007895148 303 PVD 305 elephant shark
Q08BH5       292 PAS 294 zebrafish
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap