Conserved Protein Domain Family
RRM2_hnRNPR

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cd12488: RRM2_hnRNPR 
RNA recognition motif 2 (RRM2) found in vertebrate heterogeneous nuclear ribonucleoprotein R (hnRNP R)
This subgroup corresponds to the RRM2 of hnRNP R, a ubiquitously expressed nuclear RNA-binding protein that specifically bind mRNAs with a preference for poly(U) stretches. Upon binding of RNA, hnRNP R forms oligomers, most probably dimers. hnRNP R has been implicated in mRNA processing and mRNA transport, and also acts as a regulator to modify binding to ribosomes and RNA translation. hnRNP R is predominantly located in axons of motor neurons and to a much lower degree in sensory axons. In axons of motor neurons, it also functions as a cytosolic protein and interacts with wild type of survival motor neuron (SMN) proteins directly, further providing a molecular link between SMN and the spliceosome. Moreover, hnRNP R plays an important role in neural differentiation and development, as well as in retinal development and light-elicited cellular activities. It contains an acidic auxiliary N-terminal region, followed by two well-defined and one degenerated RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal RGG motif. hnRNP R binds RNA through its RRM domains.
Statistics
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PSSM-Id: 240932
Aligned: 5 rows
Threshold Bit Score: 173.372
Created: 19-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
12230547     244 ANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTV 323 human
NP_001121335 143 ANNRLFVGSIPKNKTKENILEEFSKVTEGLLDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTV 222 African clawed ...
NP_001006309 244 ANNRLFVGSIPKNKTKENILEEFNKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTV 323 chicken
XP_014352662 244 ANNRLFVGSIPKNKTKENILEEFSKATEGLVDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKIKAWGNVVTV 323 coelacanth
XP_007892974 245 ANNRLFVGSIPKNKTKENIMEEFGKVTEGLTDVILYHQPDDKKKNRGFCFLEFEDHKSAAQARRRLMSGKVKVWGNVVTV 324 elephant shark
12230547     324 EWADP 328 human
NP_001121335 223 EWADP 227 African clawed frog
NP_001006309 324 EWADP 328 chicken
XP_014352662 324 EWADP 328 coelacanth
XP_007892974 325 EWADP 329 elephant shark
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