2K3K,6F4G


Conserved Protein Domain Family
RRM1_SNF

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cd12476: RRM1_SNF 
Click on image for an interactive view with Cn3D
RNA recognition motif 1 (RRM1) found in Drosophila melanogaster sex determination protein SNF and similar proteins
This subgroup corresponds to the RRM1 of SNF (Sans fille), also termed U1 small nuclear ribonucleoprotein A (U1 snRNP A or U1-A or U1A), an RNA-binding protein found in the U1 and U2 snRNPs of Drosophila. It is essential in Drosophila sex determination and possesses a novel dual RNA binding specificity. SNF binds with high affinity to both Drosophila U1 snRNA stem-loop II (SLII) and U2 snRNA stem-loop IV (SLIV). It can also bind to poly(U) RNA tracts flanking the alternatively spliced Sex-lethal (Sxl) exon, as does Drosophila Sex-lethal protein (SXL). SNF contains two RNA recognition motifs (RRMs); it can self-associate through RRM1, and each RRM can recognize poly(U) RNA binding independently.
Statistics
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PSSM-Id: 409905
Aligned: 8 rows
Threshold Bit Score: 140.823
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative RNA
Conserved site includes 19 residues -Click on image for an interactive view with Cn3D
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 # ##  #                        # # ### ### #                       #  #
2K3K_A         1 MEMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQ 80  fruit fly
XP_002435850   2 MDIRPNHTIYINNLNEKVKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVVFKDLNSATNALRSMQGFPFYDKPMV 81  black-legged tick
XP_001639820   1 MENPPNQTIYIKNLNEKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNALRSMQGFPFYDKPMR 80  starlet sea ane...
XP_002132163   1 MDIKPTHTIYANNLNEKIKKEELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMR 80  Ciona intestinalis
XP_002608892   1 MELRPNHTIYINNLNEKVKKEELKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKDINSATQALRSMQGFPFYDKPMR 80  Florida lancelet
XP_002737237   1 MDTRPNHTIYINNLNEKVKKDELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMR 80  Saccoglossus ko...
XP_002107818   3 IDIPPNQTLYVNNLNEKVKKEELKKSLYAIFSQFGAILDIIAMKTLKMRGQAFVVFEDISSATNALRAMQGFPFYEKPMR 82  Trichoplax adha...
6F4G_B         3 MEMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQ 82  fruit fly
Feature 1         ####
2K3K_A        81 IAYSK 85  fruit fly
XP_002435850  82 SVIVL 86  black-legged tick
XP_001639820  81 IQYAK 85  starlet sea anemone
XP_002132163  81 LAYSK 85  Ciona intestinalis
XP_002608892  81 IAYSK 85  Florida lancelet
XP_002737237  81 IGYSK 85  Saccoglossus kowalevskii
XP_002107818  83 ITYCK 87  Trichoplax adhaerens
6F4G_B        83 IAYSK 87  fruit fly

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