Conserved Protein Domain Family
RRM1_CID8_like

?
cd12459: RRM1_CID8_like 
RNA recognition motif 1 (RRM1) found in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
This subgroup corresponds to the RRM1 domains found in A. thaliana CID8, CID9, CID10, CID11, CID12, CID 13 and mainly their plant homologs. These highly related RNA-binding proteins contain an N-terminal PAM2 domain (PABP-interacting motif 2), two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a basic region that resembles a bipartite nuclear localization signal. The biological role of this family remains unclear.
Statistics
?
PSSM-Id: 409892
Aligned: 11 rows
Threshold Bit Score: 149.873
Created: 22-Dec-2011
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
NP_188063    139 IRRTVYVSDIDqsVTEEGLAGLFSnCGQVVDCRICGDPHSvlRFAFVEFADdQGAHEALSLGGTMLGFYPVRVLPSKTAI 218 thale cress
NP_175769    126 IRRTVYVSDIDqsVTEEGLAGLFSsCGQVVDCRICGDPNSvlRFAFVEFSDdQGARSALSLGGTMIGYYPVRVLPSKTAI 205 thale cress
NP_001031131 171 IRRTVYVSDLDqqVTEEQLAGLFVsCGQVVDCRICGDPNSvlRFAFIEFTDeEGAMTALNLSGTMLGFYPVKVLPSKTAI 250 thale cress
ABK22180     101 VRRTVYVCDIDhqVTEEQLAALFInCGQVIDCRICGDPNSvlRFAFIEFADeQGARAALSLAGTMLGYYPVRVLPSKTAI 180 Sitka spruce
NP_001031614 148 IRRTVYVSDIDqqVTEEQLAGLFIgFGQVVDCRICGDPNSvlRFAFIEFTDeVGARTALNLSGTMLGFYPVKVMPSKTAI 227 thale cress
NP_001030833 167 IRRTVYVSDIDqqVTEENLAGVFInCGQVVDCRVCGDPNSvlRFAFIEFTNeEGARAALSMSGTVLGFYPLKVLPSKTAI 246 thale cress
NP_197832    135 IKRTVYVSDIDnqVTEEQLASLFLsCGQVVDCRMCGDYKSilRFAFIEFTDaEGARSALRKSGTMFGSHPIRVFMSKTAI 214 thale cress
XP_001690547 193 IRRTVYISYVDcsLTEENLAAFFSdCGRILDCRICGDPNSamRFAFIEFMDvECAAKALEKTGSVLGNSPLRVLPSKTAI 272 Chlamydomonas r...
EFN54155       9 VRCTVYISDISdtVTEAQLAAFFQdCGQLVDCRVCGDPNSsmRFAFIEFMQeDSAQQALGKSGAMLGDFPIRVSPSKTAI 88  Chlorella varia...
XP_002675650  86 IKRTIYVTSIDtqILEAQVCEFFSyCGRIVNYRVCGDTQHptRFAFFEFEQkESAQAAVSLSGQFLGRYALRILGSRTPI 165 Naegleria grube...
EFJ30509      79 IRRTVYVSDIDqqVTEEQLAALFInCGQVIDCRVCGDPNSvlRFAFVEFTDeEGARQALNLAGTMLGFYPVRVLPSKTAI 158 Selaginella moe...
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap