4ERD,2LSL,4EYT,6D6V


Conserved Protein Domain Family
RRM_p65

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cd12456: RRM_p65 
Click on image for an interactive view with Cn3D
RNA recognition motif (RRM) found in the holoenzyme La family protein p65
This subfamily corresponds to the RRM of a lineage specific family containing the essential La family protein p65 found in Tetrahymena thermophila. It is a telomerase holoenzyme protein necessary for telomerase RNA (TER) accumulation in vivo. p65, together with TER and telomerase reverse transcriptase (TERT), comprise a ternary catalytic core complex of Tetrahymena telomerase, which is a ribonucleoprotein complex essential for maintenance of telomere DNA at linear chromosome ends. p65 harbors a cryptic, atypical RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), which displays high structural homology to the RRM in genuine La and LARP7 proteins.
Statistics
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PSSM-Id: 240902
Aligned: 4 rows
Threshold Bit Score: 125.515
Created: 17-Jul-2012
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Structure:4ERD; The C-terminal RRM domain of Tetrahymena thermophila telomerase protein p65 binds stem IV of telomerase RNA, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    #      #     ## #                                                
4ERD_A     12 NCLIKIINIpqgtlKAEVVLAVRhlGYEFYCDYID--------------------------------------------- 46  Tetrahymena thermo...
2LSL_A     18 NCLIKIINIpqgtlKAEVVLAVRhlGYEFYCDYIDensnqinsnliqq----------------------dqhpqlndll 75  Tetrahymena thermo...
4EYT_A     12 NCLIKIINIpqgtlKAEVVLAVRhlGYEFYCDYID--------------------------------------------- 46  Tetrahymena thermo...
6D6V_H    378 NCLIKIINIpqgtlKAEVVLAVRhlGYEFYCDYIDensnqinsnkislstqqqntaqcsniqiennliqqdqhpqlndll 457 Tetrahymena thermo...
Feature 1            ###                                 
4ERD_A     47 --GQAXIRFQnSDEQRLAIQKllnhnnnKLQIEIRGQICDVIS 87  Tetrahymena thermophila
2LSL_A     76 keGQAMIRFQnSDEQRLAIQKllnhnnnKLQIEIRGQICDVIS 118 Tetrahymena thermophila
4EYT_A     47 --GQAMIRFQnSDEQRLAIQKllnhnnnKLQIEIRGQICDVIS 87  Tetrahymena thermophila
6D6V_H    458 keGQAMIRFQnSDEQRLAIQKllnhnnnKLQIEIRGQICDVIS 500 Tetrahymena thermophila SB210

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