Conserved Protein Domain Family
RRM_TRMT2A

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cd12439: RRM_TRMT2A 
RNA recognition motif (RRM) found in tRNA (uracil-5-)-methyltransferase homolog A (TRMT2A) and similar proteins
This subfamily corresponds to the RRM of TRMT2A, also known as HpaII tiny fragments locus 9c protein (HTF9C), a novel cell cycle regulated protein. It is an independent biologic factor expressed in tumors associated with clinical outcome in HER2 expressing breast cancer. The function of TRMT2A remains unclear although by sequence homology it has a RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), related to RNA methyltransferases.
Statistics
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PSSM-Id: 409873
Aligned: 21 rows
Threshold Bit Score: 111.951
Created: 4-Oct-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8IZ69         68 FTSEIFKLELQNVPrhaSFSDVRRFLgrfg-lqpHKTKLFgq-pPCAFVTFRSaAERDKALRVLHGalWKGRPLSVRLAR 145  human
NP_649083      56 FTSEIFKVEVKNMGy-fGIGEFKKLLrntlkfdvTKIKAPtr-kEFAFVCFRSqEDQQRALEILNGykWKGKVLKAHVAK 133  fruit fly
XP_002611903  109 YTTENFKIEVRNLPryaGFAQFKKRMvnqg-ltpHKVKIIqr-dNIAFVAFRCeEDRQKALEVLNShvWKGCSLSASKSN 186  Florida lancelet
GAA28578      732 FTSEAYKIQLKNIHkytGFKQLKKLLdsln-vkyRKVKLLp---EVTFITFCTvEDRDAAIAILDGyvWRGKSFEAKVAI 807  Clonorchis si...
EGD81766      133 NCSELNKIDLKNINkhvDAGSLKKMLrkqg-vnfTRVKKLrn-gDRAFLSFANaEDKQKAMETLNGfkYKGRVLEAVEGK 210  Salpingoeca s...
CBY14531       97 FTSEIFKVELGPIPkmiGYGDLKKFItknltmkaHKIKYVkq-hGKVFICFANdEERDLARKQLDGlpLKKETLVAKIAG 175  Oikopleura di...
XP_013403739   71 FTSEIFKIEVRNLPrkfGFSQLKKRLinle-lnpVKIKAAsangSVGYVTFRNeEDRQKGLNVLNGhqWKGQVLQAKKAN 149  Lingula anatina
XP_006819067   83 FTSEIYKIEVTNLPkhyGFKQLKKMFtnqlnlkpNKIKIFnr-aTYCFVTFRCeEDRDSAIKAVNGftWRKNKLGAKKAN 161  Saccoglossus ...
RUS77788       64 FTSEIFKIQIHNLPr-fGFGDLKKRLkmlg-lkpNKIKSPdr-qSVCYICFRNeEERDNALKKLNGhlWKNHKLEAKIAA 140  eastern emera...
PRD35734      176 FTSEIFKIELGNLPnfiGHGQLRKLLqhtlnlkpRKVKAIgnplHFAFITFRDeDDRVRALNQLNGyqWKGKTLWAKKAN 255  Nephila clavipes
Q8IZ69        146 P 146  human
NP_649083     134 A 134  fruit fly
XP_002611903  187 P 187  Florida lancelet
GAA28578      808 G 808  Clonorchis sinensis
EGD81766      211 P 211  Salpingoeca sp. ATCC50818
CBY14531      176 A 176  Oikopleura dioica
XP_013403739  150 P 150  Lingula anatina
XP_006819067  162 P 162  Saccoglossus kowalevskii
RUS77788      141 P 141  eastern emerald elysia
PRD35734      256 P 256  Nephila clavipes
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