2CPI


Conserved Protein Domain Family
RRM_CNOT4

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cd12438: RRM_CNOT4 
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RNA recognition motif (RRM) found in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
This subfamily corresponds to the RRM of NOT4, also termed CCR4-associated factor 4, or E3 ubiquitin-protein ligase CNOT4, or potential transcriptional repressor NOT4Hp, a component of the CCR4-NOT complex, a global negative regulator of RNA polymerase II transcription. NOT4 functions as an ubiquitin-protein ligase (E3). It contains an N-terminal C4C4 type RING finger motif, followed by a RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The RING fingers may interact with a subset of ubiquitin-conjugating enzymes (E2s), including UbcH5B, and mediate protein-protein interactions. T
Statistics
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PSSM-Id: 409872
Aligned: 49 rows
Threshold Bit Score: 119.556
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2CPI_A         11 RVVQKNLVFVVGLsqr-------ladPEVLKRPEYFGKFGKIHKVVINNstsyag---sqgpsASAYVTYIRsEDALRAI 80   house mouse
XP_002288832   91 RVIRRNLVYAVGMpps-------iatEELLRKPEYFGQYGKIAKIVINRnhnpgd---prrasASAYVTFVHkEDTLACI 160  Thalassiosira...
NP_586472      21 RVVQKNLVYIICIpqk-------yadEGVLSRHEFFGQFGAIKKIVVNKrtss------lestASAYITYSTdEEAKTCI 87   Encephalitozo...
XP_001350747  336 RVVQRNLVFVIGItat-------yakKTVLKKNEHFGKYGKILNIIINKsqaynp--qyngpsFSAYITYSNeKEAINAI 406  Plasmodium fa...
XP_001303526   12 RVIQRDLVYVVGLpiq-------yanEDTLLKYEYFGQYGPIKKIVVNAshvhss--gnqtqsVSAYVTFRNcEDALECI 82   Trichomonas v...
CAK64705       40 RIICRNLIYVIGLapt-------lakEELLRKPEYFGQYGQIQKLIVIQsntf------nppsHAAYITYRNeQEASMAI 106  Paramecium te...
XP_654312      23 TIIQRNLVYVTNIaynivegltlqeiSERLSRFEFFGQYGEIIKIIPNIktlhnlq-sttgpsFSAYITFKTaESSIQCI 101  Entamoeba his...
EFO62236      113 RVLQSNLVYVTGVpns--------ltVDELKSSNFFGKYGTVLKIVAKHnahie----ahrhtYALYITYSTdESAKDCI 180  Giardia lambl...
EAX96216       92 FIISKKMVQIVGIpqr-------ylqTSLLIRRDYLGQYGVIKKIAIYSnekipfrkqilqgnSSVYVKFKSqYEANLCI 164  Trichomonas v...
KYK66197      459 RVIQRSLVYVIGIpss-------iakKEILKRTEFFGQYGKVLHIVINKaqgyns--awggpsYAVYVTYSTvPEAIAAI 529  Toxoplasma go...
2CPI_A         81 QCVNNvvvdGRTLKASLGTTKYCSYSGP 108  house mouse
XP_002288832  161 LALDGfyhdGRNIRASYGTSKYCSAFIK 188  Thalassiosira pseudonana CCMP1335
NP_586472      88 QEVDEslldGKVLKCTYGTTKYCTFYLR 115  Encephalitozoon cuniculi GB-M1
XP_001350747  407 YFIDGmtldNKILKASFGTTKYCSSFLK 434  Plasmodium falciparum 3D7
XP_001303526   83 YSLESfsldGSAMKASFGTTKYCSAFLR 110  Trichomonas vaginalis G3
CAK64705      107 LVSILqqliGLLVKASFGTTKYCTNFLK 134  Paramecium tetraurelia strain d4-2
XP_654312     102 RSTNGgwlaGKVLNSSLGTTKYCSHFLR 129  Entamoeba histolytica HM-1:IMSS
EFO62236      181 LSSTEtylgGNLLRCSFGTTKFCTSFLD 208  Giardia lamblia P15
EAX96216      165 LSLNNfnlkGEQINASYALTEECSEALQ 192  Trichomonas vaginalis G3
KYK66197      530 QSIDGavyeGRTLKASFGTTKYCSYFLK 557  Toxoplasma gondii TgCatPRC2
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