Conserved Protein Domain Family
RRM_BRAP2_like

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cd12437: RRM_BRAP2_like 
RNA recognition motif (RRM) found in BRCA1-associated protein (BRAP2) and similar proteins
This subfamily corresponds to the RRM domain of BRAP2, also termed impedes mitogenic signal propagation (IMP), or ring finger protein 52, or renal carcinoma antigen NY-REN-63, a novel cytoplasmic protein interacting with the two functional nuclear localisation signal (NLS) motifs of BRCA1, a nuclear protein linked to breast cancer. It also binds to the SV40 large T antigen NLS motif and the bipartite NLS motif found in mitosin. BRAP2 may serve as a cytoplasmic retention protein and play a role in the regulation of nuclear protein transport. The family also includes RING finger protein ETP1 and its homologs found in fungi. ETP1, also termed BRAP2 homolog, or ethanol tolerance protein 1, is the yeast homolog of BRCA1-associated protein (BRAP2) found in vertebrates. It may be involved in ethanol and salt-induced transcriptional activation of the NHA1 promoter and heat shock protein genes (HSP12 and HSP26), and participate in ethanol-induced turnover of the low-affinity hexose transporter Hxt3p. Members in this family contain an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), followed by a C3HC4-type ring finger domain and a UBP-type zinc finger.
Statistics
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PSSM-Id: 409871
Aligned: 16 rows
Threshold Bit Score: 116.181
Created: 22-Dec-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q7Z569       163 LCILTVPaamtSHDLMKFVApfnevIEQMKIIRDstp--nqYMVLIKFRaqaDADSFYMtCNGRQFNSied-dvCQLVYV 239 human
O48524        72 LFIVAVPnylsSLDFIRFCDsrisqVSDILFIRNdgm-edrYSVLITFSdqsEADGFYNnLNGKKFAPsea-evCHILYV 149 thale cress
XP_002671025 169 VSILAVPsfisIADFFEFIAcfecnIEKTRILRDesp--nkYMVLLQFDeqrNADSFFVqYNGRPFNSldp-ehCKIVFV 245 Naegleria grube...
EGZ27885      77 VCVVTVPshmsPVEILEFLAsfredIALVRILKDper--snCMVLMQFNsqeRADQFFQdHNGKYFNSieq-erCKIVFV 153 Phytophthora sojae
EFN56760     149 LCILALPadmgFAELCTFMGayfqhVREVRLVRRegr-gsvCLVLLRFGaqqAADDFYRdYNGRAFCMlepeilCRLVYV 227 Chlorella varia...
GBF98211     161 LCCLAIPadmpVAGFCSFVGaymrhVKRMRVLRRegagqsvCMVLLTFDqqeQADGFLHdFNGQPFSSlepeilCRLVYV 240 Raphidocelis su...
XP_005705323 107 LCVLAVPayftAADFCMFVGpfgnhIRNMRLLRDsra-cnrYMVLIQFEsleSAENFYRgYEGKLFSSigp-ecCRILSV 184 Galdieria sulph...
PRP88322      95 CCVLGVPsfstPSDFARFTGphirnISHMRVLRHtkt-dktYMVVLRFFtreGADSFYNdLNNKQFVSmep-evCTVLFV 172 Planoprotosteli...
XP_004351678 124 VAVLAVPswmaVADFCQFVApyqklIARMRVVTYtekvpgrYAVLLEFRqqvMADQFYLeYNGKMYNSmes-eeCRVGFV 202 Acanthamoeba ca...
SAM02165      68 LCTLSIPsylsMPDFLNFVApvdssVSHYRVLRDatp--htYMVLMTFRdgkVGHDYYKqYNNRKFSSmed-evCQVVYI 144 Absidia glauca
Q7Z569       240 ERAE 243 human
O48524       150 MSVE 153 thale cress
XP_002671025 246 KSVE 249 Naegleria gruberi strain NEG-M
EGZ27885     154 RSVE 157 Phytophthora sojae
EFN56760     228 KEVE 231 Chlorella variabilis
GBF98211     241 RSVE 244 Raphidocelis subcapitata
XP_005705323 185 SSVV 188 Galdieria sulphuraria
PRP88322     173 SSIV 176 Planoprotostelium fungivorum
XP_004351678 203 KSVE 206 Acanthamoeba castellanii str. Neff
SAM02165     145 ESIV 148 Absidia glauca
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