2WBR


Conserved Protein Domain Family
RRM_GW182_like

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cd12435: RRM_GW182_like 
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RNA recognition motif (RRM) found in the GW182 family proteins
This subfamily corresponds to the RRM of the GW182 family which includes three paralogs of TNRC6 (GW182-related) proteins comprising GW182/TNGW1, TNRC6B (containing three isoforms) and TNRC6C in mammal, a single Drosophila ortholog (dGW182, also called Gawky) and two Caenorhabditis elegans orthologs AIN-1 and AIN-2, which contain multiple miRNA-binding sites and have important functions in miRNA-mediated translational repression, as well as mRNA degradation in Metazoa. The GW182 family proteins directly interact with Argonaute (Ago) proteins, and thus function as downstream effectors in the miRNA pathway, responsible for inhibition of translation and acceleration of mRNA decay. Members in this family are characterized by an abnormally high content of glycine/tryptophan (G/W) repeats, one or more glutamine (Q)-rich motifs, and a C-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The only exception is the worm protein that does not contain a recognizable RRM domain. The GW182 family proteins are recruited to miRNA targets through an interaction between their N-terminal domain and an Argonaute protein. Then they promote translational repression and/or degradation of miRNA targets through their C-terminal silencing domain.
Statistics
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PSSM-Id: 409869
Aligned: 12 rows
Threshold Bit Score: 131.02
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2WBR_A          7 SSWLLLKNLtaq----------------------------------idGPTLRTLCMQHGPLVSFHPYLnqGIALCKYTT 52   fruit fly
Q9HCJ0       1513 SSWLVLRNLtpq----------------------------------idGSTLRTLCLQHGPLITFHLNLtqGNAVVRYSS 1558 human
XP_002591205 1201 SNWLILKNLtpq----------------------------------idGSTLRTLCMQHGPLLTFHLNLsqGCALVCYMS 1246 Florida lancelet
Q8NDV7       1780 TNWLVLKNLtpq----------------------------------idGSTLRTLCMQHGPLITFHLNLphGNALVRYSS 1825 human
Q9UPQ9       1647 SYWLVLHNLtpq----------------------------------idGSTLRTICMQHGPLLTFHLNLtqGTALIRYST 1692 human
EFX90425     1444 SSWLVLRNLtpq----------------------------------idGSTLKTLCVQHGPLHNFHLYLnhGVALIRYST 1489 common water ...
XP_002409881  868 CTFLVLKNLtpqvgpshvpfpstlaaplgyadcgirgaswlakqaridGSTLKTLCMQHGPLQLFHLFLkhGLALAQYSS 947  black-legged ...
XP_006822922 1472 NNWLVLRNLtpq----------------------------------idGSTLQTLCKQHGPLHTFHLNLsqGQALIQYGT 1517 Saccoglossus ...
KOF85633     1683 SNWLVLRNLtpq----------------------------------idGSTLKTLCQQHGPLQFFYLSLnhGQALVRYSS 1728 Octopus bimac...
XP_013416128 2039 STWVVLRNLtpq----------------------------------idGSTLKTLCMQHGPVQMFYLSLhnGTAVVRYHT 2084 Lingula anatina
XP_022092499 1387 TNWLVLRNLtpq----------------------------------idGSTLRLLCLQHGPLEHFHMNLsqGTAIIAYKT 1432 crown-of-thor...
RMX46337     1594 STWLVLRNLspr----------------------------------mdPKTLRPMCERHGPLLTFQLNLrhGNSLIRYGS 1639 Pocillopora d...
2WBR_A         53 rEEANKAQMALNNCVLANTTIFAES 77   fruit fly
Q9HCJ0       1559 kEEAAKAQKSLHMCVLGNTTILAEF 1583 human
XP_002591205 1247 kEEAAKAQKSLHTCVLGNTTILADF 1271 Florida lancelet
Q8NDV7       1826 kEEVVKAQKSLHMCVLGNTTILAEF 1850 human
Q9UPQ9       1693 kQEAAKAQTALHMCVLGNTTILAEF 1717 human
EFX90425     1490 gEEAAKAQSALNNCVLGNTTIYADL 1514 common water flea
XP_002409881  948 rEEAAKAQSALHNCILSNTTMLAYI 972  black-legged tick
XP_006822922 1518 rDEAAKAQKALHMCVLGNTTIMAEF 1542 Saccoglossus kowalevskii
KOF85633     1729 kDEAVKAQKALNTCVLGNTTILAEF 1753 Octopus bimaculoides
XP_013416128 2085 rEEAMKAQKSLNHCILGNTTIIADF 2109 Lingula anatina
XP_022092499 1433 rDEAFKAQRSLNTCVLSNTTIIADF 1457 crown-of-thorns starfish
RMX46337     1640 mEEAAKARAALNGMMLVGSQVAADF 1664 Pocillopora damicornis
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