5LSB,6G90


Conserved Protein Domain Family
RRM_SAFB_like

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cd12417: RRM_SAFB_like 
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RNA recognition motif (RRM) found in the scaffold attachment factor (SAFB) family
This subfamily corresponds to the RRM domain of the SAFB family, including scaffold attachment factor B1 (SAFB1), scaffold attachment factor B2 (SAFB2), SAFB-like transcriptional modulator (SLTM), and similar proteins, which are ubiquitously expressed. SAFB1, SAFB2 and SLTM have been implicated in many diverse cellular processes including cell growth and transformation, stress response, and apoptosis. They share high sequence similarities and all contain a scaffold attachment factor-box (SAF-box, also known as SAP domain) DNA-binding motif, an RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a region rich in glutamine and arginine residues. SAFB1 is a nuclear protein with a distribution similar to that of SLTM, but unlike that of SAFB2, which is also found in the cytoplasm. To a large extent, SAFB1 and SLTM might share similar functions, such as the inhibition of an oestrogen reporter gene. The additional cytoplasmic localization of SAFB2 implies that it could play additional roles in the cytoplasmic compartment which are distinct from the nuclear functions shared with SAFB1 and SLTM.
Statistics
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PSSM-Id: 409851
Aligned: 18 rows
Threshold Bit Score: 88.465
Created: 27-Oct-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5LSB_A        111 KLFIKNLAdsIDSDQLVKIFNKFgKLIREPEIFYLsn------gkLKCAYVYFEdfEKADLAIKSLNnQLVANNRITVD 183  Saccharomyces ...
ADY41145      176 SLWIRGIGadTKAAHLKTMFSKC-GRVVTAKVFVRrql----tsnVYFGFLSMAsvESADNCVQQFNkAVLNGQQISVE 249  pig roundworm
CCD81195      175 NLWISNLPklVKAADLKQHFSKA-GKVVSATVVMStrt-----pgGCFGFIQMAsaEEAASAARAYDlTEFGGCILRVE 247  Schistosoma ma...
XP_002108909  275 SLWIGGLQhkVRAADLKDKLSEY-GKVISATIIISmks----lesKYYGHVQMArhKEAAECIACLNnTNISGSVVTIE 348  Trichoplax adh...
CCA65561      326 SIWIRGMTpaTKASSVKQLASQY-GKVIQSKIFNSkaadangdvkNCFALIQFAdvTAMELAMTSLHqKNYQGRVLRVE 403  nematode
KOF71556      354 NLWITGLKanTKAANLKALFVKY-GWVVAAKVVTTari----psrRCYGFVIMAstEDANNCIRHLNqTKFNGTVITVK 427  Octopus bimacu...
OQR76582       10 HLWVSGLSsrCKAADLKKFFARY-ANVGSAKIVANart----tsaHCYGYITVEspADLEKCVQKLHsTRFEGSLIRVE 83   Tropilaelaps m...
Q15424        407 NFWVSGLSstTRATDLKNLFSKY-GKVVGAKVVTNars----pgaRCYGFVTMStaEEATKCINHLHkTELHGKMISVE 480  human
Q99181        109 KLFIKNLAdsIDSDQLVKIFNKFgKLIREPEIFYLsn------gkLKCAYVYFEdfEKADLAIKSLNnQLVANNRITVD 181  Saccharomyces ...
6G90_R        109 KLFIKNLAdsIDSDQLVKIFNKFgKLIREPEIFYLsn------gkLKCAYVYFEdfEKADLAIKSLNnQLVANNRITVD 181  Saccharomyces ...
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