Conserved Protein Domain Family
RRM1_RBM28_like

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cd12413: RRM1_RBM28_like 
RNA recognition motif 1 (RRM1) found in RNA-binding protein 28 (RBM28) and similar proteins
This subfamily corresponds to the RRM1 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs.
Statistics
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PSSM-Id: 409847
Aligned: 26 rows
Threshold Bit Score: 108.833
Created: 23-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9NW13          5 TLFVGRLPPsaRSEQLEELFSQvGPVKQCFVVtekg-skacRGFGYVTFSmlEDVQRALKEITtf--eGCKINVTVAKKK 81   human
NP_565513      21 TVCVSGLPYsiTNAQLEEAFSEvGPVRRCFLVtnkg-sdehRGFAFVKFAlqEDVNRAIELKNgstvgGRRITVKQAAHR 99   thale cress
EFN55004       11 TVFVRGIDAsvTNEQLQEFFSEvGPVKNAFLVrrgk-dgphRGFGFVQFAvqEDAERAAAEVPgkelaGRKLKVEGAVKR 89   Chlorella var...
EFA86091       10 QIFISNLPFdtKKEEIEEFFSEvGPIKRSFIVtkkddktkcTGNAFLWFAlaDHAKEAIKSFNnkkfkNRSIKVEQAKPK 89   Polysphondyli...
XP_024519866   17 TVFVRGLPLtlSDAQLEEAFSDiGPVRRAFTVkdka-tdkhRGFGFVQFAiaEDAQRAVASKNdssmeGRRIKVEVARKR 95   Selaginella m...
GBF88093        9 TVFVRNLSYdvDDKVLEELFNDvGPVRQAFLVkekg-qprhKGFGYVQFAlaEDAERAVQELHgravqGRPMKVEIAAQR 87   Raphidocelis ...
XP_024389400   30 TVFVRSLPYtlTDAQLEAYFGEvGPVRNCFTVkqkg-serhRGFGFVNFAvkEDAIRAVETKNgaalqGRKIKVELAKRR 108  Physcomitrell...
KJE97590       56 TLFIRGLPFamNNAQLEAAFSDvAPVKTAFVVtekgtkdkcRGFGFVQFAlkDDALKAIETMNgkslgGKIISVDLANKR 135  Capsaspora ow...
SPQ96105       65 TVFVRNLPFdmTDQQFEAKFEEvGPVKRAFIVtgkg-aqgsKGFGFVVFSdpADAEAAVAQLHlsemsGRKIKVELAKRP 143  Plasmodiophor...
PIK35957        7 KVFVRNLPFscTNDQLSELFGShGPVKQCFVVkden-adrcKGFGFVTFAskDDTKKVLGKDIwm--eKRKLHIFPANKK 83   Japanese sea ...
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