Conserved Protein Domain Family
RRM1_RRT5
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cd12409: RRM1_RRT5 
RNA recognition motif 1 (RRM1) found in yeast regulator of rDNA transcription protein 5 (RRT5) and similar proteins
This subfamily corresponds to the RRM1 of the lineage specific family containing a group of uncharacterized yeast regulators of rDNA transcription protein 5 (RRT5), which may play roles in the modulation of rDNA transcription. RRT5 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains).
Links
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Statistics
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PSSM-Id: 409843
Aligned: 14 rows
Threshold Bit Score: 118.533
Created: 21-Mar-2012
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
C8Z7W7        19 TVYISNLPFtaSERDLHAFLNNYgasSVLIPTQTVRrfskrhnsnprkplGIAFAQFANnTLALKAIQDLNGtvFQNQKL 98  Saccharomyces c...
Q75AP6        50 RVYISNLSQdaTEEALTEFLKDFhpvSVLIPSQSVRgfqkt----svrplGIAYVEFKDaDTAAKVILELNGvtFMDREL 125 Ashbya gossypii...
Q6FVV7         5 RIYIANVSYssSEEDLREFLKDFnfsSVLIPCHTVRrfrrn----earsfGIAYVDFTSsEEAVRAVEELNGkeFGGRVL 80  Candida glabrat...
C5DHJ1        22 RIYISNLDFstTEEELEQFLQEFrvvSVLIPSQTVRgfrns----tvrplGIGYADFASaADALQAVENLNGkqLRERTL 97  Lachancea therm...
A7TQR2        32 RIYISNLDYssTEDELIEYLKDYkplSVLVPSHTVRgfrsn----hvkplGIAYADFETpEKAREAVEALNEtnFKNRNL 107 Vanderwaltozyma...
CCE78030      22 RVYIKNLHFgtAEDELEEFLSKYdpvNVLIPSYTVRfsray----khrpfGIAYAEFKTiEDASKVVKELNGasFKNRPI 97  Millerozyma far...
XP_020046624  38 RVYISNINFktTEDNLINYLNEYkvkTVLVPSHTVRgfksq----qqrplGIAYAEFEAvEDAQKVCEELNGkeFQGRKL 113 Ascoidea rubesc...
XP_003671223  10 SLSIRNLSYytGEQELRNYLKDYeivSLFIVTETVRgiker----larplGIAYVELSSiENAEKVIKDLNKkqFQGKTL 85  Naumovozyma dai...
ONH69325      45 RLYINNVNYqtTESDLYDLLKEFkvlSVLVPSHTVRgfkga----kqkslGIAYVEFKSaNEALLAKDAINGkeLNGRSL 120 Cyberlindnera f...
XP_003958462  14 RVYISNLNFntGEKELQDYLVDFkprTVYIPCNPHKdfrrky---fnrpmGIAYAEFESvEEAKAAIDGLNEkdFKGRPL 90  Kazachstania af...

C8Z7W7        99 FLKLHVPY 106 Saccharomyces cerevisiae EC1118
Q75AP6       126 RLRYHIPF 133 Ashbya gossypii ATCC 10895
Q6FVV7        81 RVRTHNPY 88  Candida glabrata CBS 138
C5DHJ1        98 KIKMYVPY 105 Lachancea thermotolerans CBS 6340
A7TQR2       108 KVKLYVPF 115 Vanderwaltozyma polyspora DSM 70294
CCE78030      98 YVKLHAPF 105 Millerozyma farinosa CBS 7064
XP_020046624 114 KIKPYVPY 121 Ascoidea rubescens DSM 1968
XP_003671223  86 FIKYHVPY 93  Naumovozyma dairenensis CBS 421
ONH69325     121 RVKPFLQY 128 Cyberlindnera fabianii
XP_003958462  91 KLKPYIPY 98  Kazachstania africana CBS 2517
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