Conserved Protein Domain Family
RRM1_RBM34

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cd12394: RRM1_RBM34 
RNA recognition motif 1 (RRM1) found in RNA-binding protein 34 (RBM34) and similar proteins
This subfamily corresponds to the RRM1 of RBM34, a putative RNA-binding protein containing two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Although the function of RBM34 remains unclear currently, its RRM domains may participate in mRNA processing. RBM34 may act as an mRNA processing-related protein.
Statistics
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PSSM-Id: 409828
Aligned: 39 rows
Threshold Bit Score: 94.5845
Created: 3-Oct-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P42696       185 RTVFVGNLPvt-cNKKKLKSFFKe----------------------------yGQIESVRFRSLipaegtlskkla---- 231 human
AAM50702     155 STVFVGNLPin-tKRVQLVKLFQp----------------------------yGLVQSIRLRTAggkqlfkh-------- 197 fruit fly
Q08208       148 RTVFIGNILstviTSKKVYKEFKklfgtnpiaeteesgnekeeesskksdnneFAIESIRFRSIsfdealprkvaf---- 223 Saccharomyces c...
EEY53230      74 RTVFVGNVSld-aTQKDIKKHFSv----------------------------cGQVESVRLRHLpiagcavgdagnqklm 124 Phytophthora in...
EDQ86926     103 RTIFVGNLPat-vKAKALKELFAd----------------------------cGEIESIRLRTVvrcccplavspaya-- 151 Monosiga brevic...
EEC47837      92 RTVFVGNLPtq-yNRKSLAKLFKd----------------------------cGKVESSRIRSLavtgvklpqenagnqk 142 Phaeodactylum t...
SPR00053      68 RTVFIGNVDvs-sTAQTIRKLLG------------------------------CKVESVRFRSAafsdpklpkraa---- 112 Plasmodiophora ...
XP_019853831  26 RTVFIDNIPls-tKKKDILKLVFp----------------------------fGSVESLRQRSVvvspgklpvgva---- 72  Amphimedon quee...
Q7S2L7       200 RTVFLSNVAveavTSRSAKKALMkhmasvl----------------dkeakpaQKVESIRFRSTafataaipkraay--- 260 Neurospora cras...
EAL48654     177 RTVFIANVNik-vKPAQMKKFLKq----------------------------fGKLESYRFRGGafiqdekskkvhf--- 224 Entamoeba histo...
P42696       232 -------aikrkihpdqknINAYVVFKEe-sAATQALKRNGaqi-------------adGFRIRVD 276 human
AAM50702     198 -----------kqrkvagsLNAYVVLEKp-eIAQQALALNGse--------------fkENHLRVT 237 fruit fly
Q08208       224 --------vqqkfhksrdtINAYIVYKNksaVRKICSNLNAvv--------------fqDHHLRVD 267 Saccharomyces cerevisiae S288c
EEY53230     125 ---mkvcankkilttakdnCNAYVTFVEe-sSAEAAIKLNGtt--------------lvQMKIRVD 172 Phytophthora infestans T30-4
EDQ86926     152 -----dpalrkrlaseqssMNAYVVFTAd-aAVTQALTLFSpgmpladiwtfsngvefqGHHLRVT 211 Monosiga brevicollis MX1
EEC47837     143 lvkkvcantsqvdtkakssVQGYVVFVNk-dAIEKALVLNNtevkd--------ertgtTRRIRVD 199 Phaeodactylum tricornutum CCA...
SPR00053     113 -------fitkqfhdsrptMNCYAVLSDv-aSVERCLALNGtk--------------vdGHTIRVD 156 Plasmodiophora brassicae
XP_019853831  73 --------rklgkqltgttTNFYVVMEMe-eSASACLELNGqe--------------vdGRHIRVD 115 Amphimedon queenslandica
Q7S2L7       261 -------ikksvmeattksTNAYVVYSTpaaARLACSKLNGti--------------vlDRHIRVD 305 Neurospora crassa OR74A
EAL48654     225 -------lkkeydtkvrktQNCYAVYTTpedAEKAAKEIDGke--------------flGYHLRAD 269 Entamoeba histolytica HM-1:IMSS
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