2DO4


Conserved Protein Domain Family
RRM2_SART3

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cd12392: RRM2_SART3 
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RNA recognition motif 2 (RRM2) found in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins
This subfamily corresponds to the RRM2 of SART3, also termed Tat-interacting protein of 110 kDa (Tip110), is an RNA-binding protein expressed in the nucleus of the majority of proliferating cells, including normal cells and malignant cells, but not in normal tissues except for the testes and fetal liver. It is involved in the regulation of mRNA splicing probably via its complex formation with RNA-binding protein with a serine-rich domain (RNPS1), a pre-mRNA-splicing factor. SART3 has also been identified as a nuclear Tat-interacting protein that regulates Tat transactivation activity through direct interaction and functions as an important cellular factor for HIV-1 gene expression and viral replication. In addition, SART3 is required for U6 snRNP targeting to Cajal bodies. It binds specifically and directly to the U6 snRNA, interacts transiently with the U6 and U4/U6 snRNPs, and promotes the reassembly of U4/U6 snRNPs after splicing in vitro. SART3 contains an N-terminal half-a-tetratricopeptide repeat (HAT)-rich domain, a nuclearlocalization signal (NLS) domain, and two C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains).
Statistics
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PSSM-Id: 409826
Aligned: 17 rows
Threshold Bit Score: 139.388
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2DO4_A        16 EKHKLFISGLPFscTKEELEEICKAHGtVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKmDGMTIKENIIKVAISNS 95   human
NP_001025289 783 EKHKIFISGLPYsaTKETLEDLCKEHGtIRAIRIVTNRSGKSKGLAYVEFEDEAQASQAVLKmDGTMLENFTLSVAISNP 862  zebrafish
XP_002608466 748 EKNKLFVSNLPYtvTKEALENIFKQHGpLRGVRMVTYRSGKPKGLAYVEYEDEQTASQAVLKtDGLMIGDRKIQVAVSNP 827  Florida lancelet
EFX82792     694 EKKKLFIKGLALstTKEDLEALFKKFGiLKDVRLVTFRNGSPKGLAYVEFEDEVSATMALNQtDGTTFQDKVLTVALSNP 773  common water flea
XP_014350136 729 EKHKLFVSGLPFscTKEELEEICKQHGnVRDIRMVISRAGKFKGIAYIEYENEAQASQAVLKmDGMTVGERVIAVAISNP 808  coelacanth
XP_007899931 752 EKHKLFVSGLPFscTKEELEELCKEHGiLKQIRLVTNRAGKPKGLAYIEYENEAQASQAVLKmDGMMIKDHVISVAISNP 831  elephant shark
BAH71988      19 EKNKLFVKGLPFtcTKTDIENIFKPYGaLKDVRVVTFRNGHSKGLAYVDFEDEVSAAQALLKtDNTIIKDRTISVALSRP 98   pea aphid
PIK53817     779 EKNKLFVSNLPRsaTKEELEKLFSQHGtLKEVRMVTYRSGMPKGLAFVEFENEADASKAIMGtDGTDLAGHSISVAISNP 858  Japanese sea c...
PIO27570     302 EKHKLFVSGIPFscTKEEVEEVFKEHGtITQIRLVTNRSGKPKGLAYVEYENEAQASQAVIKlNGTKIKDHTIQVAISNP 381  American bullfrog
OQR70347     727 EKNKLFVKNIPLdaTKEELQSLFETCGsVTDVRLCTLRNGKFKGIAYVDYKDETAASAAVVKyDGFELRNKMLSVAISNP 806  Tropilaelaps m...
2DO4_A        96 G 96   human
NP_001025289 863 P 863  zebrafish
XP_002608466 828 P 828  Florida lancelet
EFX82792     774 P 774  common water flea
XP_014350136 809 P 809  coelacanth
XP_007899931 832 P 832  elephant shark
BAH71988      99 P 99   pea aphid
PIK53817     859 P 859  Japanese sea cucumber
PIO27570     382 P 382  American bullfrog
OQR70347     807 P 807  Tropilaelaps mercedesae
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