5UZ5


Conserved Protein Domain Family
RRM3_NGR1_NAM8_like

?
cd12346: RRM3_NGR1_NAM8_like 
Click on image for an interactive view with Cn3D
RNA recognition motif 3 (RRM3) found in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins
This subfamily corresponds to the RRM3 of NGR1 and NAM8. NGR1, also termed RNA-binding protein RBP1, is a putative glucose-repressible protein that binds both RNA and single-stranded DNA (ssDNA) in yeast. It may function in regulating cell growth in early log phase, possibly through its participation in RNA metabolism. NGR1 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a glutamine-rich stretch that may be involved in transcriptional activity. In addition, NGR1 has an asparagine-rich region near the carboxyl terminus which also harbors a methionine-rich region. The family also includes protein NAM8, which is a putative RNA-binding protein that acts as a suppressor of mitochondrial splicing deficiencies when overexpressed in yeast. It may be a non-essential component of the mitochondrial splicing machinery. Like NGR1, NAM8 contains two RRMs.
Statistics
?
PSSM-Id: 409782
Aligned: 12 rows
Threshold Bit Score: 137.839
Created: 5-Dec-2011
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
5UZ5_F       312 NTTVFIGGLsslVTEDELRAYFqpFGTIVYVKIPvGKCCGFVQYVDRlSAEAAIAGMQGf--------pIANSRVRLSWG 383 Saccharomyces c...
ABK24911     262 NTTIFVGGLdpnATDEDLRQVFgpFGEIVYVKIPvGKGCGFVQFTNRsSAEEALQKLHGt--------iIGQQSIRLSWG 333 Sitka spruce
XP_002979028 225 NTTIFVGGLdpaVSEEELQKTFgeFGELVYVKIPpGKGCGFVQFTHRsCAEEALGKLHGt--------mIRQQAIRLSWG 296 Selaginella moe...
Q00539       312 NTTVFIGGLsslVTEDELRAYFqpFGTIVYVKIPvGKCCGFVQYVDRlSAEAAIAGMQGf--------pIANSRVRLSWG 383 Saccharomyces c...
EGO02253     258 NTTVFVGGLsplISEETLRTFFapFGDIHYVKVPvGKHCGFVQFVRKaDAERAIEKMQGf--------pIGGSRIRLSWG 329 Serpula lacryma...
O13759       296 NTTVFVGGLasnLSEKDLQVCFqpFGRILNIKIPfGKGCGFVQYSEKsAAEKAINTMQGa--------lVGTSHIRLAWG 367 Schizosaccharom...
O60176       302 NSTVFVGGLskfVSEEELKYLFqnFGEIVYVKIPpGKGCGFVQFVNRqSAEIAINQLQGy--------pLGNSRIRLSWG 373 Schizosaccharom...
ACO61932     221 NSTVFVGGLdptLTEPDLRTHFeaFGELVYVKIPaGKGCGFVQFTRRaDAEASIQALNGt--------mMGASRVRLSWV 292 Micromonas sp. ...
Q9FPJ8       259 NTTIFVGGLdanVTDDELKSIFgqFGELLHVKIPpGKRCGFVQYANKaSAEHALSVLNGt--------qLGGQSIRLSWG 330 thale cress
EIE18010     226 NTTLFIGGLssgVSEDDLRVLFgrFGDIVYTKIPpGKGCGFVQFVQRpAAESAMAQMQArcspslfgqiLGGSTIRISWG 305 Coccomyxa sp. C...
P32831       359 NTTVFVGGLvpkTTEFQLRSLFkpFGPILNVRIPnGKNCGFVKFEKRiDAEASIQGLQGf--------iVGGSPIRLSWG 430 Saccharomyces c...
XP_019578111 198 NTTIFVGGLdssVTDEDLKQPFsaYGEIVSVKIPlGKGCGFVQFVNRpNAEEALEKLNGa--------vIGKQTVRLSWG 269 Chinese rufous ...
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap