2XNR,2KVI,2L41,2XNQ


Conserved Protein Domain Family
RRM_Nab3p

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cd12342: RRM_Nab3p 
Click on image for an interactive view with Cn3D
RNA recognition motif (RRM) found in yeast nuclear polyadenylated RNA-binding protein 3 (Nab3p) and similar proteins
This subfamily corresponds to the RRM of Nab3p, an acidic nuclear polyadenylated RNA-binding protein encoded by Saccharomyces cerevisiae NAB3 gene that is essential for cell viability. Nab3p is predominantly localized within the nucleoplasm and essential for growth in yeast. It may play an important role in packaging pre-mRNAs into ribonucleoprotein structures amenable to efficient nuclear RNA processing. Nab3p contains an N-terminal aspartic/glutamic acid-rich region, a central RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal region rich in glutamine and proline residues.
Statistics
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PSSM-Id: 240788
Aligned: 8 rows
Threshold Bit Score: 121.011
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Structure:2XNR; Saccharomyces cerevisiae Nab3 RRM domain binds RNA (UCUU), contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     # #                           # #  # #                          # #####
2XNR_A     24 RLFIGNLPlknVSKEDLFRIFSpYGHIMQINIKNAFGFIQFDNPQSVRDAIECEsQEMNFGKKLILEVSSS 94  baker's yeast
2KVI_A     12 RLFIGNLPlknVSKEDLFRIFSpYGHIMQINIKNAFGFIQFDNPQSVRDAIECEsQEMNFGKKLILEVSSS 82  baker's yeast
2L41_A      4 RLFIGNLPlknVSKEDLFRIFSpYGHIMQINIKNAFGFIQFDNPQSVRDAIECEsQEMNFGKKLILEVSSS 74  baker's yeast
2XNQ_A     24 RLFIGNLPlknVSKEDLFRIFSpYGHIMQINIKNAFGFIQFDNPQSVRDAIEXEsQEMNFGKKLILEVSSS 94  baker's yeast
EIE83234  138 RMLIRQLPn-rVDKEDVMDYFStYGEVLEVVFKNAFGFVQFDSPFACANAVKCEnGKKFKGVVLELEVCRT 207 Rhizopus oryzae RA 99-880
EGE80511  420 RLFVGNLPterVTKRDLFHLFHkYGDLAQISIKQAYGFVQFLEPASCRRALEAEqGGFIRGRKIHLEISKP 490 Ajellomyces dermatitidis AT...
CAH17865  305 IFLKGNLPtekVTKKDVFRIFHqYGRLGQIALKQAYGFVQFFSSEECQNAINGEqGTMIRGRKMHLEVSKP 375 Pneumocystis carinii
NP_593002 364 RLFLGHLNtksLSKRNLWKVFKiYGPLAQIVLKANYGFVQFFTNEDCARALNAEqGNFVRGQKLHLEISKI 434 Schizosaccharomyces pombe 9...

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