Conserved Protein Domain Family
RRM1_Spen

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cd12308: RRM1_Spen 
RNA recognition motif 1 (RRM1) found in the Spen (split end) protein family
This subfamily corresponds to the RRM1 domain in the Spen (split end) family which includes RNA binding motif protein 15 (RBM15), putative RNA binding motif protein 15B (RBM15B), and similar proteins found in Metazoa. RBM15, also termed one-twenty two protein 1 (OTT1), conserved in eukaryotes, is a novel mRNA export factor and component of the NXF1 pathway. It binds to NXF1 and serves as receptor for the RNA export element RTE. It also possesses mRNA export activity and can facilitate the access of DEAD-box protein DBP5 to mRNA at the nuclear pore complex (NPC). RNA-binding protein 15B (RBM15B), also known as one twenty-two 3 (OTT3), is a paralog of RBM15 and therefore has post-transcriptional regulatory activity. It is a nuclear protein sharing with RBM15 the association with the splicing factor compartment and the nuclear envelope as well as the binding to mRNA export factors NXF1 and Aly/REF. Members in this family belong- to the Spen (split end) protein family, which share a domain architecture comprising of three N-terminal RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal SPOC (Spen paralog and ortholog C-terminal) domain.
Statistics
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PSSM-Id: 409749
Aligned: 11 rows
Threshold Bit Score: 100.779
Created: 26-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q96T37       169 YKTLKISELGSQLSdeaVEDGLFHEFKRF-GDVSVKISHLsgsgsgdERVAFVNFRRpEDARAAKHARg----RLVLYDR 243  human
XP_002401786  79 YKVLCLSNLNHKISdvmLRETLQDQFSRF-GNVSVKVCHEg-----nEPVAYVYFRSyEEAKEARHAKs----RLVLFDK 148  black-legged tick
EFX67872      80 YKTLLVSSIHPKASdevVKDSLYREFKKY-GEVSIKLVHGae---peDRLAYVSFRNpEDAREARHSKq----RIILYDK 151  common water flea
Q8NDT2       138 YKTLLISSLSPALPaehLEDRLFHQFKRF-GEISLRLSHTpe----lGRVAYVNFRHpQDAREARQHAla--rQLLLYDR 210  human
NP_610339     98 YKVLCVSALPPKAPddfIEETLYREYKKF-GDFSVRLAHDl-----dERVAYVCFRTpEDAREAKHHKp----RLIIYDK 167  fruit fly
XP_002742134  92 YRTLKVSNFSVHVSdmaIKDALYHEFKKF-GEVNVRLTYTag----dERVAYVNFRVtDGAREARRAKt---gRLVLFDR 163  Saccoglossus k...
CCD78551      63 SRTICVRNISSKLSadvVEQCVYRELGKY-GDLSINVGHLg-----gERVALVTYQYsEDAQEALCDSp----IIYILDR 132  Schistosoma ma...
XP_003387831 129 DFSLHISNLDMRPPdeeLKKVLFKEFKKY-GYITVKVLGYg-----kERRAFINYQHyDEAKRAKKDKq----RIVLFNR 198  Amphimedon que...
XP_002112600  91 RLKLKITNLPRDRSdedIENKLYYQFKKF-GQPSIHVQGFg-----kSRYGVINFKHnTQCREAKSFCeq--nSIYVFDR 162  Trichoplax adh...
CBY23034      13 YRNLVVRNIPAEIKdhdVVECLQEEYSKY-GKCRVRMGKDdh----dDRVGFIEFAHhESAKDAKAARg----HLVMNER 83   Oikopleura dioica
XP_002164038  44 KCQVRATGFPAEVSdneIKDVVIHEMEKFgDVLNIQLQGHd-----hNRQAHVLFRDdDAARELRRYClerhcKVIAFQR 118  green hydra
Q96T37       244 PLKIEAVY 251  human
XP_002401786 149 QVQVEPVL 156  black-legged tick
EFX67872     152 PAVLEPVY 159  common water flea
Q8NDT2       211 PLKVEPVY 218  human
NP_610339    168 MAIVEPVY 175  fruit fly
XP_002742134 164 TVDITPVY 171  Saccoglossus kowalevskii
CCD78551     133 PANVTSLI 140  Schistosoma mansoni
XP_003387831 199 PINVEWSK 206  Amphimedon queenslandica
XP_002112600 163 PVNVEYYQ 170  Trichoplax adhaerens
CBY23034      84 RLRIDVWQ 91   Oikopleura dioica
XP_002164038 119 ALHFDFDL 126  green hydra
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